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Posts by Thom Hallmark, PhD

Honestly, this is a life dream

6 months ago 2 0 0 0

This is so sad. A loss...

1 year ago 2 0 0 0

In Exedos, these venomous snakes start biting people, and all they had to do to be healed of the snake bites was look at this brass snake on a stick. Same story, different details.

1 year ago 0 0 0 0
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RNA-triggered CRISPR-Cas12a2 Preferentially and Cooperatively Cleaves Collateral DNA CRISPR-Cas systems often rely on collateral cleavage activities against nucleic-acid substrates to combat recognized mobile genetic elements. Of the associated RNA-guided Cas effector nucleases, Cas12...

Wondered which cleavage substrate Cas12a2 prefers and how it selects between substrates? In this new preprint we find out! A great, continuing collaboration between the Jackson lab at USU and the Beisel Lab at HIRI
www.biorxiv.org/content/10.1...

1 year ago 5 0 0 0

Wow, that's a pretty structure

1 year ago 0 0 0 0

These are some fun traditions :)

1 year ago 0 0 0 0

Someone should tell academics...

1 year ago 0 0 0 0

Very insightful

1 year ago 1 0 0 0

Reading a recursive method section with "we performed the method as described in (citation)" going back 10 years

1 year ago 0 0 0 0
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This dissertation describes my work characterizing Cas12a2 to uncover the fundamental principles governing RNA targeted cell killing.

If your interested in targeted cell killing, follow me. There are several cool stories in the works from the Jackson, Beisel and Liu labs (not on πŸ¦‹)

1 year ago 0 0 0 0

We think Cas12a2 could be repurposed to selectively kill cells based on specific RNA targets (eg. Pathogens, cancer, autoimmune cells, &c.) while leaving healthy cells unharmed. But before using Cas12a2 for these applications we needed to understand the basics of its activity.

1 year ago 0 0 1 0

Cas12a2 is an RNA guided nuclease like Cas9, but instead of targeting dsDNA, Cas12a2 recognizes RNA targets. Target binding activates a collateral nuclease activity that cleaves RNA, ssDNA, and dsDNA! This shreds all the nucleic acid in the cell, causing growth arrest and cell death.

1 year ago 0 0 1 0

Watch out for updates as the rest of my data becomes available!

1 year ago 0 0 0 0
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Cas12a2 elicits abortive infection through RNA-triggered destruction of dsDNA - Nature RNA targeting by the Sulfuricurvum type V single-effector nuclease SuCas12a2 drives abortive infection through non-specific cleavage of double-stranded DNAβ€”after recognition of an RNA target through a...

Contents:
Ch.1 review regulating mechanisms Of CRISPR systems
Ch.2 Detailed methods (submitted)
Ch.3 Cas12a2 activity (www.nature.com/articles/s41...)
Ch.4 Cas12a2 structure (www.nature.com/articles/s41...)
Ch.5 Substrate preference (submitted)
Ch.6 Activation mechanism of Cas12a2 (preparation)

1 year ago 1 0 1 0

My PhD research focused on studying new bacterial immune systems, specifically, new CRISPR systems. Most people think of CRISPR as a genome editor, but it started as a way for bacteria to defend against viruses.

1 year ago 0 0 1 0

Because my dissertation contains some exciting data yet to be published it is currently under embargo (sorry no downloads 'til 2029), I want to give a quick overview of my work.

1 year ago 0 0 1 0
Mechanisms Regulating Abortive Infection by CRISPR – Cas12a2 In the wake of the 2020 COVID19 pandemic, we have become acutely aware of the threat caused by viral infection. Humans are not alone in being threatened by viruses. Bacteria are under constant attack ...

What a moment! My PhD dissertation is finally finished! πŸ₯³

digitalcommons.usu.edu/etd2023/383/

1 year ago 2 0 2 0

Classic

1 year ago 0 0 0 0

Especially this time of year, on the oregon coast, you can never be sure. Always happy for sunny days

1 year ago 2 0 0 0
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Common sense is woefully uncommon :/ hopefully we can keep schools around at least until it is...

1 year ago 1 0 0 0

Classic

1 year ago 1 0 1 0
Post image Post image Post image Post image

🎨 In case anyone need…

The NIH BioArt Source is an awesome library of *free* professionally drawn illustrations for scientific presentations or figures. Downloadable in HD. Thank you NIH for this invaluable tool πŸ™!

Check it out πŸ‘‡
bioart.niaid.nih.gov

1 year ago 1202 493 44 28

Nice!

1 year ago 0 0 0 0

The first two: bottom of the first overlaps with the top of the second and rescaled?

1 year ago 1 0 1 0

I have really loved the starter packs. The other place was so hard to find people to connect with!

1 year ago 1 0 0 0

They gotta prove they're a real person

1 year ago 1 0 0 0
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Thanks! It was very helpful!

1 year ago 1 0 0 0

Welcome!

1 year ago 1 0 0 0

Thanks! New here so I appreciate the help😊

1 year ago 1 0 0 0

Hello BlueSky! Young scientist looking to connect. Anybody interested in bacterial immunity, structural biology or microscopy?

1 year ago 3 0 2 0