Advertisement · 728 × 90

Posts by Frederic Mentink-Vigier

Preview
isayevlab (Isayev Lab at CMU) AI4Science and Science4AI

🚨 AIMNet2 MLIP models are now available on @huggingface 😊 Check it out: huggingface.co/isayevlab and updated documentation: isayevlab.github.io/aimnetcentral/… #compchem #compchemsky #chemsky

1 week ago 13 4 0 0
Post image

Glad to share our new work: RitS (Right into the Saddle): a generative model for direct transition state (TS) prediction.
📄 Paper: chemrxiv.org/doi/full/10.26…
🤠 Code: github.com/isayevlab/RitS
• Flow-matching model with explicit stereochemistry control
• Direct TS generation from SMILEs #compchem

1 week ago 31 9 2 2
Post image

New issue of @ssnmrjournal.bsky.social (volume 142)
www.sciencedirect.com/journal/soli...
#NMRchat

2 weeks ago 3 2 0 0
Screenshot of "Manage Plugins" window in Avogadro2, including over 20 plugins. A table shows several plugins including generators, RDKit, cclib, build-ase, xtb, aimnet2, genice2, TurtleMol, multicharge, antechamber, chiraltube, etc. with a README on the right hand side and buttons to search, install from a local directory, remove selected, and install / update selected

Screenshot of "Manage Plugins" window in Avogadro2, including over 20 plugins. A table shows several plugins including generators, RDKit, cclib, build-ase, xtb, aimnet2, genice2, TurtleMol, multicharge, antechamber, chiraltube, etc. with a README on the right hand side and buttons to search, install from a local directory, remove selected, and install / update selected

Screenshot of an example plugin for Chiraltube, indicating n, m values, number of repeats, and material, with MoS2 selected and the generated nanotube in the background with yellow spheres for sulfur atoms and turquoise spheres for Mo atoms

Screenshot of an example plugin for Chiraltube, indicating n, m values, number of repeats, and material, with MoS2 selected and the generated nanotube in the background with yellow spheres for sulfur atoms and turquoise spheres for Mo atoms

Post image Screenshot of ORCA input generator, showing Basic, SCF, Basis, and Electronic Property tabs, and input file text.

Screenshot of ORCA input generator, showing Basic, SCF, Basis, and Electronic Property tabs, and input file text.

Avogadro 2.0 isn't just a viewer and editor — it's an extensible platform for chemistry

A plugin system lets you add ML & electrostatic models, new builders and tools. Already over 20 available…

Build the tools you need: avogadro.cc/develop/plug...
#avogadro #openscience #compchem #opensource

2 weeks ago 14 6 0 1
Visualization of the COVID spike protein 6vxx with real-time shadows in Avogadro2 to give depth effects. All hydrogen atoms are hidden. Grey spheres are carbon atoms, red spheres are oxygen, blue spheres are nitrogen, and yellow spheres are sulfur atoms.

Visualization of the COVID spike protein 6vxx with real-time shadows in Avogadro2 to give depth effects. All hydrogen atoms are hidden. Grey spheres are carbon atoms, red spheres are oxygen, blue spheres are nitrogen, and yellow spheres are sulfur atoms.

Screenshot from Avogadro showing a C₆₀ buckminsterfullerene cage with a translucent purple sodium atom inside

Screenshot from Avogadro showing a C₆₀ buckminsterfullerene cage with a translucent purple sodium atom inside

Screen rendering of a zeolite supercell showing shadows and depth blurring. Brown spheres are silicon atoms and red spheres are oxygen atoms

Screen rendering of a zeolite supercell showing shadows and depth blurring. Brown spheres are silicon atoms and red spheres are oxygen atoms

Rendering of a protein surrounded by a solvation sphere of water in wireframe view (using red-white lines to indicate the water molecules)

Rendering of a protein surrounded by a solvation sphere of water in wireframe view (using red-white lines to indicate the water molecules)

Avogadro 2.0's rendering was rebuilt for modern GPUs. Smooth even with tens of thousands of atoms.

Real-time shadows and ambient occlusion give depth and clarity — and a new layer system lets you hide solvent, toggle styles, and focus on what matters.

#opensource #openscience #compchem

2 weeks ago 18 4 0 1
Post image Post image Post image Post image

No fooling, Avogadro 2.0.0 is finally here!

Rebuilt from the ground up: fast modern rendering, improved stability, designed for the next generation of molecular, biomolecule, and materials research & education. 🧪 ⚗️

avogadro.cc/install/
discuss.avogadro.cc

#opensource #openscience #compchem

2 weeks ago 49 16 4 0

I'm glad to see the theoretical PXRD working :)

2 weeks ago 2 0 0 0
Preview
Toward ultimate NMR resolution with deep learning Deep learning delivers super-resolution for multidimensional NMR spectra.

Toward ultimate NMR resolution with deep learning
Science Advances
www.science.org/doi/10.1126/...

3 weeks ago 5 4 0 0

Quick question, can it predict molecular salts?

3 weeks ago 1 0 1 0
Fast Molecular Crystal Structure Prediction using Sampling by Analogy to Previously Predicted Landscapes | ChemRxiv We demonstrate a proof of concept for an approach to fast molecular crystal structure prediction using analogy to hypothetical crystal structures of related molecules. Our method constructs different valid analogues of predicted crystal structures of ...

Pleased to share my latest pre-print with @graemeday.bsky.social

chemrxiv.org/doi/full/10....

This is a proof of concept work for a means of fast CSP by forming and optimising analogues of previously predicted crystal structures of similar molecules

#chemsky #compchemsky

3 weeks ago 3 1 1 1
Advertisement
Preview
Stochastic tensor contraction for quantum chemistry Jiace Suna and Garnet Kin-Lic Chan (2026) Highlighted by Jan Jensen What this paper lacks in terms of punchy title, it makes up for in conte...

New highlight: Stochastic tensor contraction for quantum chemistry
(Monte Carlo Meets Coupled Cluster: Slashing the Cost of CCSD(T)) www.compchemhighlights.org/2026/03/stoc... #compchem

3 weeks ago 7 1 1 0
From reddit r/OrganicChemistry @Impressive_Honey8334 I updated my free NMR Impurity Solver to include 13C support and bulk peak parsing

From reddit r/OrganicChemistry @Impressive_Honey8334 I updated my free NMR Impurity Solver to include 13C support and bulk peak parsing

From reddit r/OrganicChemistry @Impressive_Honey8334 I updated my free NMR Impurity Solver to include 13C support and bulk peak parsing www.reddit.com/r/OrganicChe... #NMRchat 🧲

3 weeks ago 1 1 0 0

@maer.bsky.social @ninowili.bsky.social

3 weeks ago 1 2 1 0
conference poster

conference poster

RT JEOL USA @JEOLUSA We are excited to be @enc-conference.org on the beautiful Asilomar site in Pacific Grove, CA. Many activities are planned with the highlight being our mini-symposium on Sunday, April 12, 12:00 PM - 2:30 PM. Link to register: go.jeolusa.com/ENC_2026_Sym...
#NMR #NMRchat 🧲

4 weeks ago 1 1 0 1
Preview
Structural characterization and the role of EPR spectroscopy for protein–polymer conjugates Protein-polymer conjugates (PPCs) are an important class of therapeutic macromolecules offering improvements in protein stability, circulation time, a…

Protein–polymer conjugates: how do we understand their structure & dynamics? 🔬Our new review highlights EPR spectroscopy+complementary techniques for insights in vitro & in cells.
Read more 👇
www.sciencedirect.com/science/arti...
#ProteinPolymerConjugates #EPR #Biomaterials #PolymerScience

1 month ago 6 4 0 0
Post image

#compchem #machinelearning #quantumcomputing #compbio New preprint: "The Convergence Frontier: Integrating Machine Learning and High Performance Quantum Computing for Next-Generation Drug Discovery".
@qubit-pharma.bsky.social
arxiv.org/abs/2603.17790

1 month ago 8 4 0 1

@tuowang.bsky.social @nationalmaglab.bsky.social

1 month ago 2 1 0 0

@nationalmaglab.bsky.social

1 month ago 1 0 0 0
Performance of machine learning tools for NMR crystallography | ChemRxiv Nuclear magnetic resonance (NMR) crystallography is a robust method for structure determination, but its reliance on density functional theory (DFT) for geometry refinement and tensor prediction limits its speed. While Machine Learning (ML) tools like ...

What if NMR crystallography could be 100x faster — without sacrificing accuracy?

UMA can fully replace DFT for geometry optimization. and combined with ShiftML3, predictions are statistically indistinguishable from DFT benchmarks
#NMRchat #CompChem

chemrxiv.org/doi/full/10....

1 month ago 10 2 0 0
TOC Graphic

TOC Graphic

#NMRchat Broadband cross polarization for ultra-wideline magic-angle spinning NMR pubs.rsc.org/en/Content/ArticleLandin...

1 month ago 3 2 0 0
Advertisement
Preview
Karl F. Freed, pioneering theoretical chemist and decoder of molecular complexity, 1942–2026

Honoring the legacy of Karl F. Freed (1942–2026). A titan who decoded molecular complexity, mentored Nobel laureates, and shaped the foundations of theoretical chemistry for 50+ years at the University of Chicago.

Read the full remembrance: shorturl.at/APz0x

#UChicagoChem #ChemLegacy #KarlFreed

1 month ago 4 2 0 0
Post image

Jim Emsley (1934-2026)

1 month ago 5 1 1 0
Towards Foundation Models Trained from Crystal Structure Prediction of the Organic Molecular Solid State | ChemRxiv Machine-learning interatomic potentials (MLIPs) promise near ab initio accuracy at a fraction of the computational cost, unlocking atomistic simulations at scales previously inaccessible. Yet, their accuracy and generalizability remain critically limited ...

We're pleased to share this preprint on @chemrxiv.org

Towards Foundation Models Trained from Crystal Structure Prediction of the Organic Molecular Solid State

40+ million predicted crystal structures + accurate ML potentials for organic molecular crystals

chemrxiv.org/doi/full/10....

1/10

1 month ago 16 8 1 1

Any update on g-XTB? #CompChem

1 month ago 0 0 0 0
Preview
Rapid Assignment of Chemical Shifts From Crystal Structures in Solid‐State NMR Chemical shift assignment in solids is a long and tedious process that relies on complex 1D and 2D NMR experiments. With prior knowledge of the 3D structure, this process can be significantly sped up...

@angewandtechemie.bsky.social (open) Rapid Assignment of Chemical Shifts From Crystal Structures in Solid-State NMR, Ruben Rodriguez-Madrid, Jacob Brian Holmes, Lyndon Emsley* onlinelibrary.wiley.com/doi/10.1002/... #NMRchat 🧲

1 month ago 5 1 0 0

Visit www.globalnmr.org for updates and stay tuned for more details! Follow us on X (@global_nmr), Bluesky (@globalnmr), LinkedIn (@global nmr discussion meetings) and WeChat (@Global NMR Discussions).

1 month ago 2 1 0 0
Post image

Magnetic resonance enthusiasts! 🧲
Save the date for the Global NMR Online Conference 🗓️ July 22-24, 2026! Fully online, 3 days of MR presentations & discussions (free & open to all! No travel, no fees, just science!)
Stay tuned for registration details! #GlobalNMROC2026 #NMR

1 month ago 4 3 1 1
Aaron Rossini of Iowa State and Ames National Laboratory with the nuclear magnetic resonance instrument in his Hach Hall lab. Iowa State University/Christopher Gannon

Aaron Rossini of Iowa State and Ames National Laboratory with the nuclear magnetic resonance instrument in his Hach Hall lab. Iowa State University/Christopher Gannon

Science Briefing: High magnetic fields reveal atom-level structures of drugs, materials. Iowa State's Aaron Rossini has developed solid-state NMR methods that are helping design better drugs, catalysts and semiconductors www.news.iastate.edu/news/science... #NMRchat #NMR 🧲

2 months ago 16 5 1 0

Thank you very much indeed @rociomer.bsky.social and @smnlssn.bsky.social for the opportunity to visit Chalmers, and to speak in this series! #compchem

1 month ago 13 4 0 0
Advertisement