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Posts by Rob Fagan

That camera view is good when they're on the perch or the roof of the box. There's a second camera view below that shows the inside of the box. The female is there at the moment incubating hey eggs

5 days ago 0 0 1 0
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Sheffield Peregrines Sheffield Peregrines

If you want a second stream to maximise the baby dinosaur action in a few weeks time....

peregrine.sites.sheffield.ac.uk

5 days ago 0 0 1 0

Ah, another day another game of "is it a cold or is it hay fever?"

6 days ago 2 0 0 0

#microsky Tour de force from the @pmoyniha.bsky.social @lislowe.bsky.social & @proftracypalmer.bsky.social labs on the Type VII secretion in Mycobacteria 🎉👏👏👏

Mine was a minuscule contribution, flattered to feature.

www.biorxiv.org/content/10.6...

3 weeks ago 7 1 0 0
Stylized M logo with gradient blue and green colors next to bold text reading Microbiology Society on a white background.

Stylized M logo with gradient blue and green colors next to bold text reading Microbiology Society on a white background.

Just one day to go until the JMM seminar with Dr Robert Fagan! Be sure to catch their discussion on ‘Clostridioides difficile - an evolving AMR threat’. Register here: https://microb.io/4l58vI6 #JMM

3 weeks ago 1 2 1 0

Oh that is sad news. RIP Jeff

1 month ago 3 0 0 0

Find the hot-off-the-press plasmids here!
www.addgene.org/browse/artic...

2 months ago 5 3 0 0

Huge thanks to everyone involved! Hannah Fisher, Laurence de Lussy Kubisa, @funnirudh.bsky.social, Eloise Walker, Joseph Kirk, @peteroatley.bsky.social, Roy Chaudhuri, Gill Douce and @michaeljormsby.bsky.social

2 months ago 1 0 0 0

All of these plasmids use a consistent set of restriction sites so a single cloning strategy can be used to evaluate multiple promoters or tags and all cassettes are compatible with the knock-in plasmids for complementation or stable single copy expression

2 months ago 3 0 1 0
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These can be used for identification of strains in mixed populations - particularly useful for competitive index experiments. You can potentially use 12 times fewer mice in infection studies.

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Figure 4 from https://doi.org/10.1099/mic.0.001665 - showing the use of genetic barcodes to distinguish strains in mixed populations during competitive growth in vitro or in the mouse gut

Figure 4 from https://doi.org/10.1099/mic.0.001665 - showing the use of genetic barcodes to distinguish strains in mixed populations during competitive growth in vitro or in the mouse gut

Finally we generated a set of knock-in plasmids, including 12 with genetic barcodes that allow the C. difficile genome to be tagged with a 9bp sequence that allows unambiguous identification in sequencing datasets

2 months ago 2 0 1 0
Figure 2 from https://doi.org/10.1099/mic.0.001665 - showingWestern blot detection of 3xHA and 6xHis tagged proteins, and purification of a StrepTagged protein

Figure 2 from https://doi.org/10.1099/mic.0.001665 - showingWestern blot detection of 3xHA and 6xHis tagged proteins, and purification of a StrepTagged protein

Figure 3 from https://doi.org/10.1099/mic.0.001665 - showing fluorescence microscopy  of C. difficile and C. sporogenes expressing a range of red fluorescent fusions

Figure 3 from https://doi.org/10.1099/mic.0.001665 - showing fluorescence microscopy of C. difficile and C. sporogenes expressing a range of red fluorescent fusions

To the cloned gene you can add a number of different tags for purification, Western blot detection and fluorescence microscopy - His, HA, StrepTag, mCherry, mScarlet, SNAP, CLIP

2 months ago 3 0 1 0
Figure 1 from https://doi.org/10.1099/mic.0.001665 - showing promoter activity from a panel of constitutive and inducible promoters in three Clostridia species

Figure 1 from https://doi.org/10.1099/mic.0.001665 - showing promoter activity from a panel of constitutive and inducible promoters in three Clostridia species

We have created a set of modular plasmids with a selection of 10 constitutive and 2 inducible promoters - all of which have been benchmarked in C. difficile, C. sporogenes and C saccharoperbutylacetonicum

2 months ago 2 0 1 0
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A set of genetic tools for use in Clostridioides difficile and related species The Clostridia are a phylogenetically diverse group of anaerobic, spore-forming bacteria that include species of medical, veterinary and industrial importance. The last two decades have seen major adv...

New paper from us.

If you're interested in genetic manipulation of Clostridia, we have a few new tools for you! 36 new plasmids - all available from @addgene.bsky.social

www.microbiologyresearch.org/content/jour...

#microsky

2 months ago 30 13 1 2
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Ah! Sorry to hear that mate. I think MRC started sending the rejections today too

2 months ago 1 0 1 0

MRC?

2 months ago 1 0 1 0

She's been lead restricted for 3 weeks after spay - that wasn't fun. A lot happier now that she's a forest dog again. I think she is starting to settle a bit. We definitely had a bad few weeks around the 9 month point!

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Yellow Labrador Pip asleep with her head on my shoulder. Just visible is the grey wet robe she's wearing

Yellow Labrador Pip asleep with her head on my shoulder. Just visible is the grey wet robe she's wearing

Our puppy turned 1 today. I think I managed to tire her out on a muddy walk!

2 months ago 30 1 2 0
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MRC funding update An update on MRC funding during UKRI’s transition, what’s changing, and the next steps for paused opportunities and reopening timelines.

They've separately said:
Our transition to new ways of working also means we unfortunately expect to make a reduced number of awards to applications currently being assessed by our four research boards and developmental pathway funding scheme.
www.ukri.org/blog/mrc-fun...

2 months ago 1 1 0 3

So despite Chapman acknowledging poor comms, they're still trying to spin this. "slightly lower" just isn't accurate, not even close. Discussing only 20% of submitted grants and funding at most 20% of these is not a *slightly* lower funding rate

2 months ago 1 0 1 0
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Sir Ian McKellen performing a monologue from Shakespeare’s Sir Thomas More on the Stephen Colbert show. Never have I heard this monologue performed with such a keen sense of prescience. Nor have I ever been in this exact historical moment.TY Sir Ian, for reaching us once again.
#Pinks #ProudBlue

2 months ago 32394 13911 586 1587

Colleagues of mine @naomilpollock.bsky.social and @alice-rothnie.bsky.social are at a BBSRC event today and have been told that the RM call is paused, until maybe March, to allow them to transition to a open call rather than 3 deadlines a year. Nice that this is widely communicated 😉

2 months ago 6 2 4 1

A master class on how not to do comms.... Thanks for the info Alan!

2 months ago 1 0 0 0

That's much more positive than the news from MRC - first good news I've heard in the last week

2 months ago 0 0 0 0

Have you seen anything to suggest when assessments will restart? That's what's missing from the absolutely appalling communication from UKRI. Even a few months delay is going to leave a huge number of postdocs and finishing PhDs high and dry

2 months ago 0 0 1 0

Absolutely spot on Ali - I think your quotes are excellent

2 months ago 0 0 0 0
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These are the life-blood of science. All that lab knowledge lost, careers ended. All the investment in their training to this point lost to academic research. That's the human cost of UKRI's "review period to develop implementation"

2 months ago 6 3 1 0

I know what they're getting at with the "could put jobs at risk" but can we focus on the immediate impact? Each suspended round at MRC and BBSRC means about 80 fewer postdoc jobs and the retrospective cuts at MRC add another 30 or so

2 months ago 10 7 3 0

Leaks everywhere and finally we get an official statement, one that somehow manages to say a lot while; No timelines. No clarity. No acknowledgement of impact on ECRs whose careers depend UKRI funding.

“Later this year” isn’t a plan. And the sector deserves better than reassurance without detail.

2 months ago 26 16 1 0