PhD student Priyanshu Raikwar showcasing his research on origin and evolution of life at #Microbio26 ; Microbiology society annual conference 2026 !
Do find him to know about the application of genomics, proteomics, ML in evolutionary biology. @microbiologysociety.org
@ineosoxford.bsky.social
Posts by Keith Jolley
If you want to hear about LIN codes and their application to meningococcal outbreaks, then please come along to my talk at 4:45pm today in the Transformative Tools session at @microbiologysociety.org #MicroBio26 #omics
Really pleased to see our work (LIN codes developed for high-resolution typing of meningococci) has been directly utilised in the @ukhsa.bsky.social meningococcal disease outbreak technical briefing
I am excited to share a pre print for one of the main outputs from my current postdoc, that I have been working on for a couple of years. This LIN code system for N. meningitidis adds a layer of stability for high resolution typing of the meningococcal population.
Tree drawn within the iTOL interface generated by LINtree. The tree is annotated with LIN codes and clonal complexes in different colours.
LINvis displays datasets of LIN codes as a series of hierarchical packed circles.
BIGSdb v1.52.1 has been released. This adds 2 new plugins for LIN code visualisation - LINtree (@giphy-ip.bsky.social) and LINvis. See github.com/kjolley/BIGS... for release notes. BIGSdb powers all the databases at @pubmlst.org and BIGSdb Pasteur.
In Iquitos, Peru this week 🇵🇪 working on enteric pathogen genomics and surveillance in the Amazon.
Science powered by collaboration, rain, food… and Inca kola!
Neisseria gonorrhoeae carries an unusually large number of restriction–modification systems (up to 16!), many of which are phase-variable. How does this affect plasmid transmission in gonococci? doi.org/10.64898/202...
Huge preprint if you are interested in bacterial strain taxonomy! The why and how of cgMLST LIN codes: An extensively revised and expanded version doi.org/10.1101/2024... I will summarize it for you in this thread 👇
Day 30: Everything #LyricsPrompt #LyricsPrompt2025
Wham! - Everything She Wants
youtu.be/Yf_Lwe6p-Cg?...
Day 28: Step #LyricsPrompt #LyricsPrompt2025
Madness - One Step Beyond
youtu.be/SOJSM46nWwo?...
Day 27: Cover #LyricsPrompt #LyricsPrompt2025
Bjork - Cover Me
youtu.be/QW0fwUTedNE?...
Day 26: Minute #LyricsPrompt #LyricsPrompt2025
Boy Kill Boy - Six Minutes
youtu.be/lMx-5sUekLg?...
BIGSdb v1.15.6 has been released. This contains 2 new plugins - GeneScanner and a wrapper for PlasmidFinder. Also added support for third party analysis fields for various plugins and performance improvements.
Release notes at github.com/kjolley/BIGS...
Day 24: Fever #LyricsPrompt #LyricsPrompt2025
Level 42 - Fashion Fever
youtu.be/QFgWJPdQF3Y?...
Day 23: Train #LyricsPrompt #LyricsPrompt2025
Flash and The Pan - Waiting for a Train
youtu.be/Xuy_jIKN7Lw?...
Day 21: Alive #LyricsPrompt #LyricsPrompt2025
Empire of the Sun: Alive
youtu.be/IPKAwJKGSDc?...
Day 20: Something #LyricsPrompt #LyricsPrompt2025
Depeche Mode - Something To Do
youtu.be/DyuizFhil7k?...
Day 19: Kid #LyricsPrompt #LyricsPrompt2025
Gorillaz - Kids with Guns
youtu.be/VCkFSe3voRc?...
Day 17: Horse #LyricsPrompt #LyricsPrompt2025
Siouxie and the Banshees - Swimming Horses
youtu.be/-tSfr7udoM0?...
Oops, sorry!
Day 16: Smile #LyricsPrompt #LyricsPrompt2025
The Killers - Smile Like You Mean It
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Day 15: Evening #LyricsPrompt #LyricsPrompt2025
Editors - In This Light and on This Evening
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Day 14: Careful #LyricsPrompt #LyricsPrompt2025
Pink Floyd - Careful with that axe, Eugene
youtu.be/tMpGdG27K9o?...
Day 13: Summer #LyricsPrompt #LyricsPrompt2025
Bryan Adams - Summer of '69
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Day 12: Fire #LyricsPrompt #LyricsPrompt2025
Big Country - Fields of Fire
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Day 10: Anything #LyricsPrompt #LyricsPrompt2025
Eddie & The Hot Rods - Do Anything You Wanna Do
youtu.be/bQJ0R57k7HQ?...
Day 9: Orange #LyricsPrompt #LyricsPrompt2025
Suggs - Oranges and Lemons again
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Day 8: Rest #LyricsPrompt #LyricsPrompt2025
Antony Szmierek - Restless Leg Syndrome
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Day 7: Country #LyricsPrompt #LyricsPrompt2025
Blur - Country House
youtu.be/gpuh1WE-RVw?...
Day 6: Mine #LyricsPrompt #LyricsPrompt2025
Guns N' Roses - You Could Be Mine
youtu.be/MXx9S2nDouY?...