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Posts by Ali Maximilian Erturk

๐—ฌ๐—ผ๐˜‚๐—ฟ ๐˜€๐—ฐ๐—ถ๐—ฒ๐—ป๐—ฐ๐—ฒ ๐—ด๐—ผ๐˜ ๐˜†๐—ผ๐˜‚ ๐˜๐—ต๐—ฒ ๐—ผ๐—ณ๐—ณ๐—ฒ๐—ฟ. ๐—ฌ๐—ผ๐˜‚๐—ฟ ๐—ป๐—ฒ๐—ด๐—ผ๐˜๐—ถ๐—ฎ๐˜๐—ถ๐—ผ๐—ป ๐˜€๐—ธ๐—ถ๐—น๐—น๐˜€ ๐—ฑ๐—ฒ๐˜๐—ฒ๐—ฟ๐—บ๐—ถ๐—ป๐—ฒ ๐˜„๐—ต๐—ฎ๐˜ ๐˜†๐—ผ๐˜‚ ๐—ฏ๐˜‚๐—ถ๐—น๐—ฑ ๐˜„๐—ถ๐˜๐—ต ๐—ถ๐˜.

What would be your negotiation advice to the younger generation?

3 weeks ago 1 0 0 0

And to senior PIs and department heads reading this: ๐—ต๐—ฒ๐—น๐—ฝ ๐˜†๐—ผ๐˜‚๐—ฟ ๐˜๐—ฟ๐—ฎ๐—ถ๐—ป๐—ฒ๐—ฒ๐˜€ ๐˜„๐—ถ๐˜๐—ต ๐˜๐—ต๐—ถ๐˜€. Share what you know. ๐ธ๐‘ ๐‘๐‘’๐‘๐‘–๐‘Ž๐‘™๐‘™๐‘ฆ support the young women in your groups. Every person who negotiates well makes it easier for the next one.

3 weeks ago 1 0 1 0

Negotiation isn't a one-time thing. ๐—œ๐˜ ๐˜ช๐˜ด ๐˜๐—ต๐—ฒ ๐—ท๐—ผ๐—ฏ. As a PI, we negotiate for grants, contracts, space, and people. How you negotiate your own position signals how you'll fight for your team.

Talk to people. Salary transparency in academia is still mostly informal. Build your network and use it.

3 weeks ago 1 0 1 0

And importantly: ๐—ป๐—ฒ๐—ด๐—ผ๐˜๐—ถ๐—ฎ๐˜๐—ฒ ๐˜ฃ๐˜ฆ๐˜ง๐˜ฐ๐˜ณ๐˜ฆ ๐˜†๐—ผ๐˜‚ ๐—ฎ๐—ฐ๐—ฐ๐—ฒ๐—ฝ๐˜ ๐˜๐—ต๐—ฒ ๐—ผ๐—ณ๐—ณ๐—ฒ๐—ฟ. Once you accept, there is usually little to no chance to negotiate later, because your biggest leverage is gone. Take that seriously.

3 weeks ago 3 0 3 0

Your leverage is built ๐‘™๐‘œ๐‘›๐‘” ๐‘๐‘’๐‘“๐‘œ๐‘Ÿ๐‘’ the offer arrives.
Be great at what you do.
Be visible. Generate alternatives.
Do your homework on what's possible in terms of salary and start-up packages.

3 weeks ago 1 0 1 0

And the data is clear: ๐˜„๐—ผ๐—บ๐—ฒ๐—ป ๐—ฑ๐—ถ๐˜€๐—ฝ๐—ฟ๐—ผ๐—ฝ๐—ผ๐—ฟ๐˜๐—ถ๐—ผ๐—ป๐—ฎ๐˜๐—ฒ๐—น๐˜† ๐—ฟ๐—ฒ๐—ฐ๐—ฒ๐—ถ๐˜ƒ๐—ฒ ๐—น๐—ผ๐˜„๐—ฒ๐—ฟ ๐˜€๐—ฎ๐—น๐—ฎ๐—ฟ๐—ถ๐—ฒ๐˜€ and are often expected to stay on the "don't ask" side. That needs to change.

A few things I'd tell any junior scientist about to start their first PI or industry position:

3 weeks ago 1 0 1 0

Because we don't want to seem "difficult."

Here's what I've learned: ๐˜๐—ต๐—ฒ๐—ฟ๐—ฒ ๐—ถ๐˜€ ๐˜ข๐˜ญ๐˜ฎ๐˜ฐ๐˜ด๐˜ต ๐˜ข๐˜ญ๐˜ธ๐˜ข๐˜บ๐˜ด ๐—ฟ๐—ผ๐—ผ๐—บ ๐˜๐—ผ ๐—ป๐—ฒ๐—ด๐—ผ๐˜๐—ถ๐—ฎ๐˜๐—ฒ. Even in systems like Germany, where salaries look rigid on paper, top-ups and start-up packages are negotiated all the time.

The difference? Some people ask. Others don't.

3 weeks ago 1 0 1 0

One thing nobody teaches you in academia: ๐—ต๐—ผ๐˜„ ๐˜๐—ผ ๐—ป๐—ฒ๐—ด๐—ผ๐˜๐—ถ๐—ฎ๐˜๐—ฒ.

We spend 10+ years learning how to do science, write grants, and present data. But when the job offer finally comes, most people justโ€ฆ accept it.

Because we're relieved.
Because we think the salary is fixed.

3 weeks ago 8 0 1 0
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Using vDISCO tissue clearing, and a new ultrabright chemical labeling strategy. This work introduces LINCS for rapid, scalable 3D connectivity mapping from single neurons to whole brains, advances for high-throughput circuit mapping.

Great work by Rui Lin lab.
www.sciencedirect.com/science/arti...

1 month ago 11 6 0 0
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Be my colleague! :)

1 month ago 3 2 0 0

Come work with us!

1 month ago 2 2 0 0

Job available at the amazing Erturk lab in Munich

1 month ago 8 2 0 0
LMU Klinikum Mรผnchen hiring Staff Scientist / Postdoc โ€“ Tissue Clearing & 3D Image Analysis in Greater Munich Metropolitan Area | LinkedIn Posted 8:17:54 AM. About us ๐Ÿง ๐Ÿ”ฌThe Institute for Stroke and Dementia Research (ISD) at LMU Klinikum is a highlyโ€ฆSee this and similar jobs on LinkedIn.

Hiring in Munich: Staff Scientist / Postdoc in Tissue Clearing and 3D Image Analysis. Weโ€™re looking for someone with strong hands-on expertise in tissue clearing, light-sheet microscopy, and quantitative 3D image analysis. Shares and recommendations are very welcome.
www.linkedin.com/jobs/view/43...

1 month ago 14 12 0 4
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In this recent Nature Methods Perspective, I outline how tissue clearing, spatial-omics, and AI converge to create deep 3D histology, enabling unbiased, organism-scale biology and next-generation digital pathology. www.nature.com/articles/s41...

2 months ago 7 2 0 0
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A new preprint introduces aDISCO, a DISCO-based clearing approach that makes whole archival FFPE human tissues transparent and antibody-compatible, enabling true 3D light-sheet histology across brain & multiple organs at cellular resolution. Aguzzi & Helmchen teams.
www.biorxiv.org/content/10.1...

2 months ago 38 13 0 1
Helmholtz Munich hiring PhD Position โ€“ Deep Learning for Multi-Omics Atlases of the Mammalian Body in Greater Munich Metropolitan Area | LinkedIn Posted 8:43:27 PM. AI Scientist - PhD Position Institute for Intelligent Biotechnologies (iBIO), Helmholtz Munich /โ€ฆSee this and similar jobs on LinkedIn.

Weโ€™re hiring โ€“ Computer Science PhD at iBIO (Helmholtz Munich / LMU).

Build AI-driven, whole-body multi-omics atlases by combining scRNA-seq, spatial transcriptomics, proteomics & 3D imaging.

Looking for strong omics data analysis skills with ML/DL.
Apply or share:
www.linkedin.com/jobs/view/43...

3 months ago 5 3 0 1

This is going to be fun! I promise!

3 months ago 2 1 0 0
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Deep Piction hiring Senior Director Drug Discovery in Greater Munich Metropolitan Area | LinkedIn Posted 10:31:52 AM. Senior Director, Drug Discovery (Long Covid)Location: Munich, Germany (Onsite)Type:โ€ฆSee this and similar jobs on LinkedIn.

My team at Deep Piction (Munich) is hiring a Senior Director, Drug Discovery (Long Covid) to build and lead our early discovery engine. If you have 10+ years in early-stage biotech/pharma, letโ€™s talk.
www.linkedin.com/jobs/view/43...

3 months ago 8 7 0 2
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Most transcriptomics studies sample ~0.001% of a mouse. Which region do we choose? Often: we guess.
Meet DISCO-seq ๐Ÿค— flipping the order: RNA-preserving clearing โ†’ whole-organ/whole-body 3D imaging โ†’ pick ROIs in 3D โ†’ unbiased scRNA-seq.
Preprint: www.biorxiv.org/content/10.6...

4 months ago 25 8 1 4

Single cell transcriptomics from cleared tissue? Impossible you say? Check out our latest preprint!

3 months ago 8 2 0 0
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Nanocarrier imaging at single-cell resolution across entire mouse bodies with deep learning - Nature Biotechnology An integrated experimental and deep learning pipeline reveals cell-level targeting of nanocarriers in whole bodies.

Very cool paper in NBT from the Dietz and Erturk labs @erturklab.bsky.social @markuselsner.bsky.social go.nature.com/4gNLjeC

3 months ago 19 2 0 0

โœจ DISCO-seq bridges 3D anatomy and single-cell genomics.
Unbiased, imaging-guided, whole-organ transcriptomicsโ€”from brain tumors to infection biology.

4 months ago 3 0 0 0
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Take-home: most spatial biology still starts from 2D slices + predefined ROIs/genes.
DISCO-seq changes the paradigm: whole-organ/whole-body 3D first โ†’ unbiased single-cell transcriptomics second.

4 months ago 3 0 1 0
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Spike S1 induces region- and condition-specific gene programs, highlighting spatial immune specialization along the gut.

4 months ago 1 0 1 0
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Small intestine scRNA-seq preserves cell-type diversity across conditions/regions (PBS vs S1; duodenum vs ileum) with expected epithelial, immune, and stromal populations.

4 months ago 2 0 1 0
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Whole-body application: 3D DISCO imaging maps organ-specific SARS-CoV-2 Spike S1 tropism.
In the gut, we see distinct enrichment patterns (duodenum vs ileum), enabling unbiased ROI selection.

4 months ago 2 0 1 0
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DISCO-seq resolves region- and cell-type-specific programs in GBM: neurons and microglia show distinct states across core vs remote niches.

4 months ago 2 0 1 0
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Imaging-guided ROI selection enables spatially resolved transcriptomics: tumor core vs remote rostral/caudal ROIs within the intact brain.

4 months ago 2 0 1 0
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3D quantification maps tumor burden across annotated brain regions, distinguishing small blobs, clusters, and large lesionsโ€”revealing region-specific heterogeneity

4 months ago 2 0 1 0
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Glioblastoma: whole-brain 3D imaging reveals dissemination beyond the primary lesion.
Satellite tumors + contralateral spread become visible in 3Dโ€”often missed in 2D or standard clinical imaging.

4 months ago 2 0 1 0