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Posts by Soham Basu

We summarized reported evidence of aboral openings across cnidarians in a supplementary table (including your examples and more). Here, we systematically show aboral pore formation from intact tissue in Nematostella, suggesting similar mechanisms may exist in other anthozoans.

3 days ago 2 0 0 0

Now published. Congrats to Soham and all co-authors! www.science.org/doi/10.1126/....
@embl.org

3 days ago 52 20 2 1

Our study on shape diversity in cnidarians is now published. The final version includes extensive new data that substantially extend the original bioRxiv preprint. Congrats to everyone who contributed to this work! www.cell.com/cell/fulltex...
@embl.org

1 month ago 140 64 5 3

The spring call for the ELBE Postdoctoral Fellows Program is open now: www.csbdresden.de/join-us/as-a.... Join the @csbdresden.bsky.social for a fully funded fellowship. @mpi-cbg.de @mpipks.bsky.social

2 months ago 17 12 2 2
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Funding a research institute of some hundred people for 10 years?
1.5 Billion.

Funding continued defense of a small country in a war for 2 or so years?
90 Billion.

Elon Musk’s personal wealth?
Estimated 750 Billion.

We are fine! Please move on, there is nothing to see here… 🙏

4 months ago 97 27 5 1
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#Mastodon, the Command Center for Large-Scale Lineage-Tracing Microscopy Datasets, is finally heading for publication (well, let's see). To #cite or not to cite shall no longer be the question 🙃, because the #preprint. Software is available in every #Fiji near you.

www.biorxiv.org/content/10.6...

4 months ago 112 48 1 1
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🧠 Join us @uzh-ch.bsky.social ! We are a new lab looking for PhDs, Postdocs & Master’s students interested in studying how human neural systems emerge & go awry using brain organoids, light-sheet imaging & genomics. 🚀 Deadline for LSZGS 1st Nov! www.lifescience-graduateschool.uzh.ch/en.html.

6 months ago 24 12 0 0
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Yesterday me and my lab celebrated #20years @mpi-cbg.de. There is a lot to say about that but the pictures from the event tell it better. Thanks city of #Dresden for the nice fireworks. That was unexpected. 10 more years or so? #LoPaTs 💕

7 months ago 115 14 7 1
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We are all super happy and proud to see our work on the function and evolution of the #cephalic #furrow published in @nature.com. Let me say a few things about the background and history of this work on the #Evolution_of_Morphogenesis (1/12)

7 months ago 348 118 16 8
A plot showing the duration of the early embryonic cell cycle of 5 different species as a function of temperature. Higher temperatures mean faster cycles, up to an optimum, beyond which the cycles slow down and eventually stop.

A plot showing the duration of the early embryonic cell cycle of 5 different species as a function of temperature. Higher temperatures mean faster cycles, up to an optimum, beyond which the cycles slow down and eventually stop.

Many years in the making but now finally online! What determines the temperature scaling and thermal limits of cell cycle duration in embryos? We tackled the question using a combination of dynamical systems analysis and experimental measurements in embryos and in cycling Xenopus extracts.

7 months ago 33 11 2 1

Final year PhD students, I know you’re desperately trying to finish experiments/revisions/submissions/write a thesis & just survive - but please spare a few minutes to apply to your dream postdoc labs.

It easily takes A YEAR from first contact, even if everything goes to plan on both sides.

7 months ago 115 53 2 3
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Stretching the immortal Hydra Dresden researchers show how cells can create a new organism from scratch by coordinating their mechanical properties.

Stretching the immortal Hydra. Publication by @paveltomancak.bsky.social group with Carl Modes @mpi-cbg.de & @zechnerlab.bsky.social shows how cells can create a new organism from scratch by coordinating their mechanical properties. @anaisbailles.bsky.social @pnas.org www.mpi-cbg.de/news-outreac...

8 months ago 46 16 1 0
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Mechanochemical coupling of cell shape and organ function optimizes heart size and contractile efficiency in zebrafish Andrews et al. demonstrate that multiscale feedback between mechanical and chemical cues builds a functional heart to support zebrafish embryonic life. Cell recruitment and organ-scale forces drive tr...

Thrilled to bits to see our latest work online in Dev Cell! 🥳

We wanted to know how cells build functional organs with precision🫀🫁📏 Here we show how coupling of cell shape and organ function fine tunes the form and contractile power of the developing #zebrafish heart 1/n

tinyurl.com/cell-stretch

8 months ago 110 36 7 5
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Very happy that the first article from my postdoc work in the Tomancak lab is now published @PNAS! www.pnas.org/doi/10.1073/.... We studied the self-organization of actin in aggregates made from Hydra cells. Thread below (1/9)

8 months ago 145 41 3 4
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EMBL scientists have used sea anemones to study how animals restore their shape following major injuries.

The results show how, in regenerating animals, systemic molecular and cellular changes help in regaining the original shape. 🪄

www.embl.org/news/science...

🧪 #MolBiol

1 year ago 29 5 0 1
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We thought we were just studying mesoglea biogenesis…Turns out Nematostella has been hiding a sophisticated backup pressure valve! Work driven by the talented PhD student Soham Basu! @embl.org‬ www.biorxiv.org/content/10.1...

10 months ago 68 21 1 8