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Posts by Emmanuel Soubies

Calliopé

We are recruiting four positions connected to Machine Learning, Statistical Learning, and AI for Science in the Applied Mathematics department at École polytechnique. Join our vibrant community at IP Paris and Hi! Paris IA center. List below🧵 tinyurl.com/3jpw9t26

2 months ago 11 19 1 0

There is an Associate Professor position in CS at ENS Lyon, with potential integration in my team, starting in sept 2026: DM me in interested!
Details at www.ens-lyon.fr/LIP/images/P...

2 months ago 6 9 0 1
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Les inscriptions aux journées MODE 2026 à Nice sont désormais ouvertes. Elles se dérouleront du 18 au 20 mars à l'Hôtel Saint-Paul.

Les inscriptions sont ouvertes jusqu'au 1 mars (majoration > 9/02). La deadline pour soumettre une communication est le **15 janvier**.

4 months ago 5 7 1 1
GRETSI : 20ème École d'Été en Traitement du Signal et des Images

Ecole d'été de Peyresq sur les modèles génératifs et le transport optimal : www.gretsi.fr/peyresq2026 (cours en français). Date limite de candidature le 27 février

4 months ago 9 6 0 0
Prix de thèse en Signal, Image et Vision décerné par le Club EEA, le GdR ISIS et le GRETSI

A diffuser : Club EEA, GdR IASIS et #GRETSI délivrent conjointement un Prix de Thèse distinguant des travaux originaux et novateurs, pour promouvoir la recherche dans le domaine du Signal, de l'Image et de la Vision. Date limite : 9 mars 2026.
gretsi.fr/prix-de-thes...

4 months ago 5 1 0 0
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Lock-in-SIM, a new approach to reject background and minimize artefacts in structured illumination microscopy (SIM): www.nature.com/articles/s41...
Glad to see @esoubies.bsky.social's FlexSIM is the best opponent in side-by-side comparisons!

4 months ago 28 8 0 0

New paper out! Together with my postdoc advisors @esoubies.bsky.social and Cédric Févotte :)

We study the optimization landscape of L0-Bregman relaxations, which naturally arise when one optimizes non-quadratic fidelity terms coupled with the L0-norm.

1/n

5 months ago 10 3 1 0
DeepInverse Joins the PyTorch Ecosystem: the library for solving imaging inverse problems with deep learning – PyTorch

💥 DeepInverse is now part of the official PyTorch Landscape💥

We are excited to join an ecosystem of great open-source AI libraries, including @hf.co diffusers, MONAI, einops, etc.

pytorch.org/blog/deepinv...

5 months ago 10 5 1 0
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#TalentsCNRS 🏅 | Découvrez le Centre International de Rencontres #Mathématiques, le Cirm, lauréat de la médaille de cristal collectif @cnrs.fr

Reconnu comme un centre incontournable à l'international, la médaille récompense la qualité du travail de son équipe.

➡️ www.insmi.cnrs.fr/fr/cnrsinfo/...

7 months ago 13 8 0 1
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#Sketchpose is out in @melbajournal.bsky.social !
Go read it if you are interested in training cell segmentation models using few partial annotations 😀

7 months ago 4 2 0 0
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New paper on the generalization of Flow Matching www.arxiv.org/abs/2506.03719

🤯 Why does flow matching generalize? Did you know that the flow matching target you're trying to learn *can only generate training points*?

w @quentinbertrand.bsky.social @annegnx.bsky.social @remiemonet.bsky.social 👇👇👇

10 months ago 55 17 2 3
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Then why does flow matching generalize?? Because it fails!

The inductive bias of the neural network prevents from perfectly learning u* and overfitting.

In particular neural networks fail to learn the velocity field for two particular time values.

See the paper for a finer analysis 😀

10 months ago 5 3 0 0
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Mon article sur les maths de l’IA est paru dans la gazette de la smf smf.emath.fr/publications...
La version en anglais est sur arxiv
arxiv.org/abs/2501.10465

11 months ago 26 8 0 0

Seems that here a part of the signal of interest has been attenuated? From my own tests (with the Matlab version on SIM data), maybe this can be improved by playing with the threshold parameter.

11 months ago 0 0 1 0
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In particular, it handles out-of-focus regions more effectively than traditional OTF attenuation.

11 months ago 9 2 1 0
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Nice work! We integrated this dark-sectioning method into our FlexSIM pipeline (github.com/esoubies/Fle...) as an additional option for handling out-of-focus signal. It works remarkably well!

11 months ago 27 5 2 0
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🔥It's D-day. We're opening pre-registration for #Mifobio2025 today🔥

👉 This is the 11th edition of the Thematic School!

All the relevant information, as well as the pre-registration form, is easily accessible on imabio-cnrs.fr but only if you are logged on this site.

👉Deadline June 10, 2025 ❗

11 months ago 22 12 1 4
A Visual Dive into Conditional Flow Matching | ICLR Blogposts 2025 Conditional flow matching (CFM) was introduced by three simultaneous papers at ICLR 2023, through different approaches (conditional matching, rectifying flows and stochastic interpolants). <br/> The m...

It was received quite enthusiastically here so time to share it again!!!

Our #ICLR2025 blog post on Flow Matching was published yesterday : iclr-blogposts.github.io/2025/blog/co...

My PhD student @annegnx.bsky.social will present it tomorrow in ICLR, 👉poster session 4, 3 pm, #549 in Hall 3/2B 👈

11 months ago 11 6 1 0
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Our PhD student Louis Romette is optimizing long-term live-cell imaging. He just casually dropped this 65-hour movie of a growing neuron (div 3 to 6) with knocked-in actin 🔥🕶️ #realtimemicroscopy

1 year ago 299 50 14 5
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Advancing Super-Resolution Microscopy: Recent Innovations in Commercial Instruments Abstract. Super-resolution microscopy techniques have accelerated scientific progress, enabling researchers to explore cellular structures and dynamics wit

We have a new review out! In this Microscopy & Microanalysis piece, Louisa Mezache and I survey some of the latest commercially available microscope technologies: Nikon NSPARC, Re-scan Gaia, CSR Biotech MI-SIM, refinements to STED, SMLM from Bruker and Abbelight… Check it out with free access:

1 year ago 107 44 2 4
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Our NCIS facility and Nikon Center of Excellence for Neuro-nanoimaging is on Bluesky! Follow @ncis-marseille.bsky.social for your stunning images and microscopy news fix by @bertrandvernay.bsky.social and me

1 year ago 40 8 1 0
Portail Emploi CNRS - Offre d'emploi - Post-doctorant (H/F) pour le développement de nouveaux concepts en microscopie de fluorescence super-résolue pour l'observation de cellules vivantes

If you are interested by building or applying new microscopes around single molecule, FLIM, in depth imaging, live-cell+ SMLM, we are opening post-doc positions for various backgrounds funded by ERC grant, don’t hesitate to contact me (flexible start).
shorturl.at/fYNij
shorturl.at/gDQkz

1 year ago 9 5 0 1
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Our paper "PnP-Flow: Plug-and-Play Image Restoration with Flow Matching" has been accepted to ICLR 2025. Here a short explainer: We want to restore images (i.e., solve inverse problems) using pretrained velocity fields from flow matching. However, using change of variables is super costly.

1 year ago 15 5 1 2
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Description Please note that job descriptions are not exhaustive, and you may be asked to take on additional duties that align with the key responsibilities ment...

We are hiring at assistant/associate professor level. We are particularly interested in applicants working on AI, Machine Learning (ML), and data sciences in topics relevant to the work of the department. Deadline 12th of February:
www.imperial.ac.uk/jobs/search-....

1 year ago 2 2 0 0
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Open Assistant Professor position in Statistical Learning or Data Science at École Polytechnique at Paris/Saclay. Reasonable teaching hours on ML/Stat or DS courses with very good students. Deadline is March 28th 2025, contact us if interested. gargantua.polytechnique.fr/siatel-web/a...

1 year ago 27 14 1 0
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#MiFoBio2025 the autumn microscopy school by @gdrimabio.bsky.social will take place from 10th to 16th October 2025. The call for workshops to share pratical knowledges is open till 31/01 ateliers-mifobio.fr
We'll bring stuff as usual, stay tuned ! @cnrsingenierie.bsky.social

1 year ago 47 29 1 1
Strasbourg, Alsace, place Kléber en hiver

Strasbourg, Alsace, place Kléber en hiver

Colloque #GRETSI, #Strasbourg 25-29 août 2025
gretsi.fr/colloque2025/
Soumission du 3 février au 21 mars
#GRETSI2025 XXXe Colloque Francophone de Traitement du Signal et des Images (vision, apprentissage, capteurs, communication, modèles)
Relayez !

1 year ago 1 3 0 0

Videos of the CNRS optimization conference now online (in French):
- Claire Mathieu : www.youtube.com/watch?v=_ZXZ...
- Gabriel Peyré : www.youtube.com/watch?v=vQOF...
- Jérôme Bolte : www.youtube.com/watch?v=tjkg...
- Axel Parmentier : www.youtube.com/watch?v=DohO...

Enjoy 🙂

1 year ago 41 9 0 0
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Have some curiosity on investigating the well-known PCA (Principal Component Analysis) with a glimpse of sparse optimization? With homogeneous or scale-invariant SOOT/SPOQ norm ratio penalties? Join INRIA for a Master Internship in 2025 (INRIA) Revisiting PCA with norm-ratio sparsity penalties

1 year ago 2 2 1 0
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New review: together with PhD student Ciarán Butler-Hallissey, we provide a comprehensive overview on how super-resolution microscopy can dissect the neuronal cytoskeleton, and the exciting perspectives ahead. Shock full of beautiful images, published or from our lab! www.nature.com/articles/s44...

1 year ago 170 48 6 5