🚨Job Alert -- again!🚨
You are into disease risk prediction based on images or other data modalities? This is for you! 🫵
careers.humantechnopole.it/job/Postdoc-...
Part of our Scientific AI Flagship @humantechnopole.bsky.social and part of our mission to benefit society via biomedical #AI solutions.
Hello, world! We are starting a worker cooperative to build, maintain, teach, and support open source scientific imaging software.
image.coop/blog/posts/2...
Congrats Esti!
🔬 Registration is open for our pilot Introduction to napari Workshop!
napari is a powerful open-source image viewer for scientific data analysis in Python. This hands-on workshop will get you exploring multi-dimensional datasets fast.
#napari #Python #ImageAnalysis #DataScience #OpenSource
A cochlea imaged in light-sheet microscopy (right) with staining for spiral ganglion neurons (red) and inner hair cells (blue). You will develop AI-based methods to analyze these structures, for example via segmentation of the individual cells (right) that will support gene therapy development for hearing loss and a better overall understanding of the anatomy of hearing.
Looking for a PhD position at the intersection of AI, imaging, and gene therapy? Apply for this position in my lab: tinyurl.com/2a2v6tvx
Part of sfb1690.uni-goettingen.de to study hearing, vision, and more.
Plus, you can create pretty pictures as the one below :).
PAPER OUT ✨ How can we make smart microscopy more interoperable? What are the technical and cultural challenges? 30+ people from academia and industry propose a roadmap: doi.org/10.1515/mim-... Also a review of applications and repo of implementations. Join the discussion! smartmicroscopy.github.io
Dear @anthropic.com please consider extending your Claude Max subscriptions to open science software devs! Our repos may not have as many stars as those of some of our OSS peers, but we develop critical infrastructure in focused areas, and might even benefit more from what Claude Max offers!
Very nice work!
Join us in building foundational datasets and models for microscopy with @jakobtroidl.bsky.social and many others
AI Engineer Pre-Training: lnkd.in/eyEEV5nm
AI Engineer Post-Training: lnkd.in/eShVQ3y9
Data Engineer Data: lnkd.in/eCvm58xH
Data Engineer Pipelines: lnkd.in/ec6qGJkX
ai.hhmi.org
One week left to register to the Bioimage Analysis with AI course in Pasteur!
This June, 1 - 5.
I give a bit more details in the thread below
👇
📢 Applications are open! This meeting brings together scientists using data-driven #AI to analyze + model neural circuits and uncover how the brain performs complex computations. 🧠
Apply by May 28 ➡️ janelia.news/NAI26
@computingnature.bsky.social @sinzlab.bsky.social @srinituraga.bsky.social
The Campus Institute Data Science (CIDAS) at university Göttingen has an open all for CIDAS fellows: www.uni-goettingen.de/de/694026.html You can apply for up to 85k€ to kick-start your own independent career at @uni-goettingen.de .
Rewrote my Python bioformats wrapper (from aicsimageio/bioio) as a standalone package:
- fully bootstrapped Java setup (just pip install)
- lazy, repeatably-indexable Array object
- fully spec-compliant OME-Zarr group obj.
- xarray/dask exports
github.com/imaging-form...
v0.0.rc1 on PyPI
I'll never get tired of lazily browsing elastix-coregistered #WSI data in @napari.org using the upcoming @openmicroscopy.org ome-zarr @zarr.dev format version that allows to specify and read transformations directly from the image data itself.
Data source: rodare.hzdr.de/record/3131
smart microscopy postdoc position in Montpellier, France. Could definitely do worse. With @glyg
forum.image.sc/t/up-to-4-year-postdoc-p...
#FOSS #Microscopy #GetFediHired
Interested in applying for an ERC, Emmy Noether, or local AI research group this year? Join our info call! I will also be there ;).
Early career researcher: Are you thinking about writing an ERC , Emmy Noether Proposal, or Lower Saxony AI Group application, and are you interested to work with us at @uni-goettingen.de and @goettingen-campus.de
We are hiring a Research Software Engineer to enhance and maintain the SpatialData framework.
We will work together with colleagues at EMBL, DKFZ, GSK, and across the scverse community.
🔗 Deadline: 15/02/2026
embl.wd103.myworkdayjobs.com/en-US/EMBL/d...
https://doi.org/10.5281/zenodo.14762435 https://bsky.app/profile/falk-illustrations.de
AMAZING JOB OPPORTUNITY ALERT!!!
@calm-stp.bsky.social is hiring a Data & Systems Steward! 🧬
🔹Manage #bioimage data & #OMERO admin
🔹Automate via #Python/#Bash
🔹Support #FAIR principles
🔹Work closely with @crick-ia-team.bsky.social
⏰ Deadline: 08 Feb 2026
Apply: www.crick.ac.uk/careers-stud...
🚨 Only a few days left to apply for maybe the best microscopy course there is!!! 🚨
👇👇👇👇👇👇👇👇👇👇👇
We are excited to share that we are hosting a hands-on course on "Electron Microscopy of Marine Environmental Samples" 🔬🌊
📍Naples, Italy 🗓️ 8th-11th of April 2026
If you are interested, check the program below!
Registration is open until the 12th of February. We look forward to seeing you there!
🚨 Alarm!!! 🚨
AI/ML course for microscopy image analysis!!! 🧐
In 2026 at Janelia (@hhmijanelia.bsky.social), no tuition, housing and meals provided! Isn’t that borderline unbelievable?!?
20 students, ~14 TAs and lecturers
🗓️ June 4-18 2026
✍️ Jan 15 2026 ✍️
🔁 pls!!
www.janelia.org/you-janelia/...
🔬 We're hiring a Junior Group Leader for Data-Driven Digital Twins/System Models in medicine/life sciences at @uni_goettingen! Perfect opportunity for early-career researchers who want to:
- Lead their own research group
- Work at the intersection of AI, simulation, and biomedicine
🧠🪰 The adult Drosophila brain connectome now gives us a complete wiring diagram of ~140k neurons. But a wiring diagram alone isn’t understanding.
How is this massive network organized?
Our paper tackles that question by mapping community structure across the entire fly brain. 1/
📣 Paper alert: We present dense attentive probing (DeAP), a method to measure the representation quality of various vision backbones for dense prediction tasks. It uses small, parameter-efficient readouts with learnable masks to generate dense predictions from backbone features of any size.
We’ll be at @neuripsconf.bsky.social on Wednesday, 3 December, from 11 a.m. to 2 p.m. (San Diego time). Come and chat with us about why distance matrices and invariances are cool! 🎉 #InterdisciplinaryML #neurips2025 #bioimageanalysis #shapequantification
Our new paper showcasing molecular connectomics with pan-expansion microscopy is out in @natbiotech.nature.com! www.nature.com/articles/s41...
This wonderful collaboration with @bewersdorflab.bsky.social was led by Ons M'Saad (now founder/CEO of Panluminate) and @allisonphysics.bsky.social. (1/5)
📢 Paper alert 📢
Chirality is known to be important for the movement of microorganisms and active matter. In our new paper out today in @natphys.nature.com, we show that chirality is used by malaria parasites to control their motion patterns:
doi.org/10.1038/s415...
Here comes a 🧵 ... (1/9)
🔬 Exciting PostDoc Opportunity! 🐁🧠
We - the @sinzlab.bsky.social (sinzlab.org) and @trose-neuro.bsky.social (troselab.de) Labs - are seeking an experimental postdoc to work at @unibonn.bsky.social with cutting-edge miniature 2-photon microscopy and gaze tracking in freely behaving mice.
