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Posts by Burcu Aykac Fas
Happy new year! I've so enjoyed the end-of-year lists of people's favorite papers from 2025, so I made a list of 16 #lipidtime studies from 2025 that I found interesting. Here they are in no particular order (please add more if you would like!), and here's to much more exciting science in 2026! 🧪
I am honored and excited to present our recent work on mixed AND asymmetric membranes at @bppbseminar.bsky.social! 🧪
My online talk will be this Friday, 11/21/25, 11am US Eastern time.
Many thanks to the organizers for putting this together! More details here: sites.google.com/view/bppb-se...
We are back, soon!
The secrets of bacterial cell envelopes' our free online seminar series is due to resume in January 2026 after a long break.
Hosted by Georgina Benn and Syma Khalid- supported by the Microbiology Society. More details soon.
@microbiologysociety.org
Please spread the word
We’re renewing our collaboration with Google DeepMind!
We'll keep developing the AlphaFold Database to support protein science worldwide 🎉
To mark the moment we’ve synchronised the database with UniProtKB release 2025_03.
www.ebi.ac.uk/about/news/t...
🖥️🧬 #AlphaFold
@pdbeurope.bsky.social
Delighted to announce the release of Boltz-2, which demonstrates unprecedented accuracy in predicting structure and binding affinity! Congrats to Sara Passaro, @gcorso.bsky.social + @jeremywohlwend.bsky.social on this stunning achievement!
📄Paper: bit.ly/boltz2-pdf
💻Code: github.com/jwohlwend/bo...
Move over AlphaFold3. Boltz-2 has arrived, bringing affinity prediction for protein-small molecule interactions!
Can’t wait to see what this group does next. Congrats to all @gcorso.bsky.social
Was a pleasure writing this:
www.cancergrandchallenges.org/news/boltz-2...
We’re launching the 1st MAVISp BioCurator Training Workshop!
Learn to use MAVISp tools to assess structural impact of missense variants. Fully online | Free
Register by June 27, 2025:
docs.google.com/forms/d/e/1F...
See Events: services.healthtech.dtu.dk/services/MAV...
#bioinformatics #modeling
We are happy to announce the release of MassiveFold 1.5.0.
It is now possible to add post-translational modifications and to run ligand screening with AlphaFold3!
Phase Space Invaders' episode 27 is now online, featuring Kresten Lindorff-Larsen @lindorfflarsen.bsky.social! Listen to it on Spotify or other platforms: www.buzzsprout.com/2313153
Groundbreaking study in Cell from @leventallab.bsky.social: phospholipid asymmetry is a defining feature of the plasma membrane and cholesterol fills the holes — major implications for how this membrane works. A #lipidtime must-read! www.cell.com/cell/abstrac...
Excellent review including a comprehensive section on what Martini can do in this field: "Computational Methods for Modeling Lipid-Mediated Active Pharmaceutical Ingredient Delivery | Molecular Pharmaceutics" pubs.acs.org/doi/10.1021/...
Awesome paper!
BioEmu from MSR: Scalable emulation of protein equilibrium ensembles with generative deep learning www.biorxiv.org/content/10.1...
Looking forward to hearing more explanainers in tomorrow's reading group session on zoom at 9am PT / 12pm ET / 6pm CET: portal.valencelabs.com/logg
Many diseases have their origin in human development, so developmental studies are crucial in helping us understand disease in the human body. The #HCA2024NatureCollection in @natureportfolio.bsky.social reveals new developmental insights.
This is an illustration with slides and lines connecting them that is to represent the Human Cell Atlas
Join us for a webinar with Sarah Teichmann and Aviv Regev, co-founders of the Human Cell Atlas, who will discuss the latest research.
Register here: https://go.nature.com/3OKQRKG
Browse the collection: https://go.nature.com/4gnRFRj
#AcademicSky 🧪
Whatever your starting point, learning about neurodiversity can be challenging thanks to a lack of well-curated and contextualised information.
This collaborative work presents an annotated introductory reading list to get you started.
That was a lot of fun! Listen to Milosz’s podcast Phase Space Invaders, lots of useful content for our community in a format we are not used to!
Excited to announce our latest publication: “Keeping it in the family: Using protein family templates to rescue low confidence AlphaFold2 models” where we explore plDDT variability in #AF2 models of @pfamdb.bsky.social
domains. doi.org/10.1093/bioa... 1/7
Excited to reveal specific reactive oxygen species as sentinel molecules that control localized protein degradation at #mitochondria to adjust electron transport chain abundance, with many implications for the role of ROS in development and disease.
www.cell.com/molecular-ce...
Not thinking this will be a popular strategy for improving metabolic health ;-)
www.nature.com/articles/s42...
www.nature.com/articles/s42...
Super excited to preprint our work on developing a Biomolecular Emulator (BioEmu): Scalable emulation of protein equilibrium ensembles with generative deep learning from @msftresearch.bsky.social ch AI for Science.
www.biorxiv.org/content/10.1...
🫧🔍Key breakthrough in #autism: pivotal role of #CPEB4 condensates revealed.
💊The study opens new avenues for the development of targeted treatments for autism.
📰 Nature @natureportfolio.bsky.social
✍️ Carla Garcia-Cabau, Anna Bartomeu et al.
➡️ bit.ly/3BfEGlR
📌 DOI: 10.1038/s41586-024-08289-w
Incredible structures and detail! I'll have to update my Respirasome animation...
youtu.be/nmoLoiFakxY?...
Excited to see the final published form of this amazing @drewberry.bsky.social animation of DNA repair go live! Watch your favourite friends BRCA1/2, RPA, RAD51, Exo1, BLM, PCNA, MRN, primase and DNA polymerase perform their recombination magic. Cool educational & scientific tool for our community.
Surely you have been using AlphaFold3 for your research project? If so, have you considered #AlphaBridge to analyze the output for macromolecule complexes prediction?
Web server: alpha-bridge.eu
Preprint: www.biorxiv.org/content/10.1...
New features coming soon!
Here are some free/open-source sites for the preparation of scientific illustrations, including icon libraries: bioicons.com, scidraw.io, bioart.niaid.nih.gov, inkscape.org, biogdp.com, reactome.org/icon-lib
"A drug that treats acute heart failure may also be used to treat an aggressive subtype of ovarian cancer."
www.science.org/doi/10.1126/...