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Posts by Saket Choudhary

Lovely! Let me know how it goes and if you have any suggestions!

3 months ago 1 0 0 0
Burrows-Wheeler Transform Interactive Tutorial

saket-choudhary.me/bwt/

3 months ago 0 0 0 0

Indeed! Here's bwt: saket-choudhary.me/bwt. Thanks for catching it!

3 months ago 1 0 1 0
Syllabus – DH607 - Autumn 2025

1. A tool to visualise how local alignment differs from global alignment side by side: saket-choudhary.me/alignmyseq/

2. A Burrows-Wheeler Transform and inverter: saket-choudhary.me/alignmyseq/

All slides and materials are available here: saket-choudhary.me/DH607/syllab...

3 months ago 3 0 2 0
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The past semester's run of DH607 - Introduction to Computational Multi-Omics at KCDH, leveraged "vibe coding" to create two tools I've always wanted:

3 months ago 1 0 1 0
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Registrations closing soon for our QSCB workshop (Dec 15th-16th)! Details: saketlab.in/qscb-workshop/

5 months ago 0 0 0 0

For an outsider(me), the field seems full of cool ideas, methods and promise! 3/3

11 months ago 0 0 0 0
Syllabus – DH603: Computational Multi-omics of Ageing

The course starts with a short history of the field, jumps into methylation and RNA clocks, and discusses how a simple PCA boosts accuracy. Finally, we discuss single-cell methylation and RNA clocks. JC-style Slides here (we did a lot of chalk talk): saket-choudhary.me/DH603/syllab... 2/3

11 months ago 0 0 1 0
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Interested in the omics of ageing? We taught a short course this semester. Focus was on learning the nuts and bolts of the various ageing clocks that exist out there and how they work (or don't). 1/3

11 months ago 1 1 1 0
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The first part of the semester-long course at KCDH/IIT Bombay focuses on teaching the statistical techniques required to analyse public health data.

All course material (slides+videos) here: saket-choudhary.me/DH302 (2/2)

1 year ago 1 0 0 0
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Did death patterns change in India pre- and post-COVID-19?

What (likely) explains the seasonality of births in India?

Does wealth (not?) drive happiness?

These are some questions we tried to answer in the Spring '25 run of DH302-Introduction to Public Health Informatics (1/2)

1 year ago 1 0 1 0
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Even more interesting is to see the change in the month of highest births. For example: Norway (from April up to 2000s to July there after):

1 year ago 0 0 0 0

Fantastic study! Interestingly most births in India are in the second half --> and are conceived during the winters. Temperature and percentage of conceptions are anti-correlated.

1 year ago 0 0 1 0

Thanks for bumping this up! This came out of a simple need - I was clueless as to why something similar didn't exist then!

1 year ago 1 0 1 0
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As a field, I believe we must move towards COMIC SANS logo plots immediately.

nbviewer.org/github/saket...

1 year ago 114 11 4 1