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Posts by Kaumudi Prabhakara

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Unfalsifiable by Design: A Year of Trying and Failing to Reproduce a Human Microbiome and Autism Study The myth of open data, reproducibility, responsibility, and accountability in science, and your role in it

How every layer of science's "self-correcting machinery" failed when Iva Veseli and I simply wanted to reproduce the findings of a high-profile study on gut microbiome and autism:

merenlab.org/2026/04/15/u...

6 days ago 162 80 12 21

Multiple fully funded PhD/postdoc positions available: experimental evolution of tumour suppression, egalitarian & fraternal ETIs, jumbo phage ecology & genetics. Related EoIs welcome.

Email CV/statement of motivation written in own words. Open until filled.

Grateful for reposting 🙏

1 week ago 7 20 1 0
Video

A new preprint with Matthew Schmitt, @kiseokmicro.bsky.social and Vincenzo Vitelli makes a huge step forward in learning functional groups of components in complex biological systems. It's dimension reduction that speaks to biological function. www.biorxiv.org/content/10.6...

1 month ago 38 22 0 1
EvolCompGen presents: Michael Barnett on the Experimental Evolution of Evolvability

EvolCompGen presents: Michael Barnett on the Experimental Evolution of Evolvability

🧬 EvolCompGen presents: Michael Barnett on the Experimental Evolution of Evolvability

💡 Join us on Friday, December 5 at 11:00 AM EST through iscb.junolive.co

Not an ISCB member? Create free Nucleus account here: iscb.swoogo.com/ISCBnucleus-...

4 months ago 5 3 0 0

Musée des Arts et Métiers. It's a hidden gem.

6 months ago 0 0 1 0

Center for Living Systems -- seeking strong post docs at the interface of physics and biology. Consider applying by Oct. 13! docs.google.com/forms/d/e/1F...

7 months ago 12 13 0 0
Preview
Diverse microbial communities assemble on both recalcitrant and labile carbon sources Microbial community assembly is shaped by the nature of available resources, with labile carbon sources such as glucose often expected to support low diversity due to rapid growth and competitive excl...

A new preprint! Data from a huge experiment by @prczhaoyansong.bsky.social show that similar microbial communities diverge depending on whether the carbon source is glucose or its polymer, cellulose. Diversity is comparable, but biomass, functions and taxonomy differ:
www.biorxiv.org/content/10.1...

8 months ago 12 6 1 0