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Posts by Samuel Zambrano

We are looking for an experienced light microscopy specialist, motivated to support our users in the Advanced Light Microscopy Facility at EMBL Heidelberg.
embl.wd103.myworkdayjobs.com/en-US/EMBL/j... -closing date 11 May 2026 @eurobioimaging.bsky.social @globalbioimaging.bsky.social

1 week ago 35 35 0 2
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These two books contain the sum total of all human knowledge

2 weeks ago 504 71 12 2
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Dynamical Systems (in) Biology - Updates 01/04/2026: A wrap-up of EMBL's Biological Oscillators meeting It was great to visit the EMBL in Heidelberg for be Biological Oscillators 2026 meeting, by far one of my favourite ones. An occasion to ...

A wrap-up of @events.embl.org
#EESBioOsc Biological Oscillators meeting! sites.google.com/view/dynamic...

2 weeks ago 1 1 0 0
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Unfortunately @events.embl.org #EESBioOsc is coming to an end. As usual it was a scientific treat, and seeing @sarapozzi.bsky.social present her work was a highlight of the meeting. Nicely done!

3 weeks ago 2 1 0 0

As always, a pleasure working with @davidemazza.bsky.social and his fantastic lab and learn from them about the dynamic mysteries of p53. Great effort from @emabiong.bsky.social with @sarapozzi.bsky.social and @alessialoffreda.bsky.social ... thank you all!
There is more to come- stay tuned!

1 month ago 1 0 0 0
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And voilà.
The simple model matches exactly what we observe:
• Enhanced p53 accumulation when NF-κB and p53 are co-activated (vs p53 alone)
• No discernible p53 activation when NF-κB is activated alone
Once you consider the whole system, the apparent mystery disappears. (6/n)

1 month ago 0 0 1 0
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This is where even a simple model becomes useful.
Activating NF-κB perturbs a specific portion of the signaling network. The model embeds that perturbation in the full system and lets us simulate three scenarios: what if we activate NF-κB alone, p53 alone, or both together? (5/n)

1 month ago 0 0 1 0

Naively, you might expect that activating NF-κB alone would also lead to a big increase p53.
But, "mysteriously", experimentally that’s not what happens. (4/n)

1 month ago 0 0 1 0

NF-κB is activated by cytokines like TNF-α, while p53 is activated by γ-irradiation.
Here’s our key observation: We show that NF-κB induces TP53 gene expression. So when you co-activate NF-κB and p53, you get higher p53 levels. (3/n)

1 month ago 0 0 1 0

This work is also a nice example of how even simple mathematical models are incredibly useful in biological systems.
They provide a rigorous description of what a perturbation actually does — within the context of the full network, not in isolation. (2/n)

1 month ago 0 0 1 0
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So grateful to my buddy the great @davidemazza.bsky.social and all the contributors from our teams to this joint effort to unravel NF-κB–p53 crosstalk. Davide’s thread nicely explains the main findings — here’s a short side note from me 🧵👇 (1/n)

1 month ago 4 1 1 0

What we found surprised us: these two transcription factors cooperate at the molecular level, yet this cooperation produces functional antagonism.
Even more intriguingly, inflammatory signals can impair DNA repair by reshaping the temporal dynamics of p53.
If you’re curious, here’s the story 👇

1 month ago 1 1 1 0

🧵 I’m very happy to share a new preprint from the @samuzambrano.bsky.social group and ours — a project driven by @emabiong.bsky.social, a PhD student bold enough to tackle a question at the interface of our two expertises: how the biological oscillators p53 and NF-κB talk to each other.

1 month ago 9 2 2 1
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Antigen affinity modulates ERK pulsing frequency during T cell activation Real-time, single-cell imaging reveals ERK signaling dynamics in response to T cell receptor stimulation.

New preclinical work in #ScienceSignaling reveals how #Tcells respond in real time to signaling inputs of varying intensities and could shed further light on how these cells become activated in the context of immunity and inflammation. https://scim.ag/4qN2h1d

3 months ago 19 3 1 0
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#FluorescenceFriday

Proud of our the last paper @cellcommlab.bsky.social & 1st one of @jboixcampos.bsky.social

We continue to study #CellMigration & how cells decide where to go: ↖️↗️⬇️?

(movie of the actin #cytoskeleton)

Full www.science.org/doi/10.1126/...
@focalplane.bsky.social @science.org 🧪🔬

3 months ago 49 12 2 0

Un fantástico tónico intelectual como dice Savater, que por lo demás está en las antípodas de bigotes.

3 months ago 0 0 0 0
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Chance favors the (theoretically) prepared mind In defense of the role of theory in innovation

Blog post: Chance favors the (theoretically) prepared mind
Data is big, machines are learning, so what good is theory anyway? Isn't most discovery driven by serendipity anyway, with theory mostly a "post-mortem"? I argue that this view discounts the value of theory.
open.substack.com/pub/arjunraj...

3 months ago 26 7 1 0
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Extremely funny to call the pope “holier-than-thou”

3 months ago 29320 4792 964 378
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Fig. 6: Mathematical model

4 months ago 106 12 2 3
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Network Medicine is entering a new phase: one that demands we rethink how we study, model and ultimately treat complex diseases.

www.sciencedirect.com/science/arti...

#ComplexSystems #NetworkScience #Medicine #MedSky 🧪🧬🌐

🧵 1/

4 months ago 54 19 2 1

Hay un poco de batiburrillo entre sanciones y aranceles en el artículo. Lo último es algo más novedoso. No tengo muy claro que obedezca a una tendencia histórica irreversible, pero con Trump erro todos mis pronósticos :-)

5 months ago 1 0 0 0

Interesante pero un poco impreciso, no? Las sanciones y las vallas europeas anteceden con mucho a Trump.

5 months ago 2 0 1 0
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Dynamical Systems (in) Biology We are a team interested in (nonlinear) dynamical systems, in cell biology, in systems biology and in combinations of these elements. Here you can learn about us, who we are, what we publish, how to c...

Halloween is a nice day to share our new site, where you can find more info on what our team does. It can briefly be summarized as Dynamical Systems (in) Biology: sites.google.com/view/dynamic...

5 months ago 1 0 0 0

How do dynamics of signalling molecules skew cell fate decisions? With this review we try to move our first steps in the signalling dynamics field, together with the expert lead of @samuzambrano.bsky.social! Kudos to Fulvio, Sara and Erika for their excellent work!

5 months ago 2 1 0 0

As usual it was a pleasure and lots of fun to collaborate with @davidemazza.bsky.social and his lab in this effort led by Fulvio Bonsignore, Sara Pozzi and Erika Aloi.

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We discuss the evidence from the main areas where this connection is being established (immunity, response to DNA damage, growth factors and developmental cues) outlining the common methodologies used and potential future directions of this emerging dynamic point of view on how cells make decisions.

5 months ago 0 0 1 0
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Frontiers | Linking signaling dynamics and cell fate decisions through single-cell imaging: evidence and challenges Our ever-growing capacity to observe dynamic processes at the single-cell level has highlighted how cells use complex signaling dynamics to provide adequate ...

Cells respond to stimuli by activating signaling pathways with a surprising variety of dynamics. Why? As we review here, there is growing evidence connecting dynamics with specific cell fate decisions www.frontiersin.org/journals/cel...

5 months ago 1 0 1 1
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DB-OTO Gene Therapy for Inherited Deafness | NEJM Genetic deficiency of otoferlin, a protein critical to synaptic transmission by the sensory hair cells of the ear, causes congenital deafness. Medicines to treat the condition are lacking; children...

New @nejm.org
One-shot gene therapy for a type of congenital deafness enabled some children to hear for the first time, and 3 of 12 kids achieved normal hearing
www.nejm.org/doi/full/10.1056/NEJMoa2400521

6 months ago 346 89 8 8
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Philosophical Transactions of the Royal Society B: Biological Sciences: Vol 380, No 1936

How dit life originate in our planet? How can we create it in the lab?Our @royalsocietypublishing.org Theme Issue "Origins of Life: the possible and the actual", coedited with @sfiscience.bsky.social C Kempes and Susan Stepney is out! royalsocietypublishing.org/toc/rstb/202... @manlius.bsky.social

6 months ago 73 31 1 0
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Pasta Physics Scoops Up an Ig Nobel Prize A group of Italian physicists was awarded the Ig Nobel Prize in Physics for their study of the phase diagram of a cheesy sauce renowned in Italy.

How do you prevent cacio e pepe sauce from congealing? A thoroughly researched answer earned its authors a prize!

7 months ago 16 5 1 0