I don't see a TM-score or a normalized version (or any that agrees with the listed order) in the webpage output or in the a3m/m8 files downloaded from there, but it is likely I am missing something. I might have to run the job locally and play with the verbosity of the output. Thanks again!
Thank you. So, the exact ranking of Foldseek results is not important? This is to respond to reviewers asking how we picked the hits we did using Foldseek's ranked order (none of the individual scores agree on the order Foldseek prints).
Does anyone know if Foldseek-multimer will report structural bit values it uses (I think) for ranking? Results appear to rank not in concordance with any value reported in the output (not Prob, Seq Id, E-value, Score), and I don't see the bit values? @martinsteinegger.bsky.social
Many around the world are losing hope as populists are on the rise, but in Turkey, a pro-European, center-left party is ahead in all polls, and just had ~25% of the country's entire adult population (15.5/60 million) show up in a single Sunday for the party's primary elections.
More from the Washington Post (and this one is a doozy) regarding the President's Budget. Note that this is an aspirational document and Congress has to act (or ignore it).
[Gift Link]
wapo.st/42gLz0Z
1/n
From the #Turkey protests - this must be one of the best protest signs ever!
When did we tell journals to use mindless, bureaucratic pen pushing? Here is a request about one crystal structure from a journal with "Structural" in its title:
"Please provide a rationale as to why blinding was not applicable for protein structure studies."
Seriously??
Maybe not the Grippen, which uses American engines. There are other European options that do not depend as much on American parts.
Histogram peaked at 3 minutes and 2 weeks since sent
When I will respond to your email
Here is the full time evolution of the R01 grant size distribution from 1998 to 2023 showing the effect of the modular cap and then the disappearance of this influence.
