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Posts by Ielyaas Cloete

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Dynamical analysis of a model of BCL-2-dependent cellular decision making - npj Systems Biology and Applications npj Systems Biology and Applications - Dynamical analysis of a model of BCL-2-dependent cellular decision making

Interested in the dynamics of cell-fate decisions & apoptosis resistance?
Read the full open-access article in npj Sys Biol & Appl: “Dynamical analysis of a model of BCL-2-dependent cellular decision making” @crmatematica.bsky.social @natureportfolio.nature.com

🔗 www.nature.com/articles/s41...

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By mapping how BCL-2 network architecture encodes fate plasticity, the study offers a quantitative basis to design combination strategies that push cells irreversibly toward apoptosis.

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These results provide a mechanistic and dynamical rationale for targeting BCL-2 family proteins in cancer and senescence-associated disease, where apoptosis resistance and senescent persistence are major obstacles.

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This framework connects molecular measurements to emergent fate landscapes, making it easier to interpret perturbations such as BH3-mimetic therapies.

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Hybrid models bridge detailed biochemical interactions with coarse-grained dynamical behaviours, clarifying which features of BCL-2 signalling are essential for multistability.

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Comparing several mechanistic BCL-2 architectures, reveal that while standard architectures support bistability, robust tristability needs additional regulatory constraints, suggesting that physiological senescence likely relies on extra control layers to stabilise an intermediate fate.

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Stochastic simulations indicate that noise in network components generates heterogeneous fate outcomes among genetically identical cells.
These fluctuations can delay/bias cell fate transitions, offering a quantitative explanation for fractional killing & variable drug responses.

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A key finding: tristability requires coop binding between BH3-only & anti-apoptotic BCL-2 proteins beyond canonical interaction schemes that typically yield only bistability.
This cooperativity provides a dynamical mechanism for maintaining a metastable senescent-like state.

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Bifurcation analysis shows how combinations of BCL-2 protein expression activity tune transitions between these states and determine whether cells commit to death or remain plastic.

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The model reveals robust multistability in BCL-2-driven cell-fate dynamics, including regimes with three distinct stable states corresponding to survival, senescence-like arrest, and apoptosis.

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How do cells decide between survival, senescence & apoptosis under stress?
In this study, the first in our series of low-order BCL-2 models, a coarse-grained BCL-2 network model is built & analysed to understand how the interplay between BCL-2 proteins shapes these fate decisions.

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