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Posts by Elisabeth Bobkova

Beth standing in front of her Poster with a coffee looking happy and well caffeinated. The poster features her work on chemically tunable permeability of engineered alpha-Hemolysin in synthetic membranes

Beth standing in front of her Poster with a coffee looking happy and well caffeinated. The poster features her work on chemically tunable permeability of engineered alpha-Hemolysin in synthetic membranes

Really enjoyed the 77th #MosbacherKolloquium ! Thanks to the organizers @gbmev.bsky.social for putting together such an amazing program and for giving me the chance to present my poster. To quote AndrΓ© Nadler: Membranes are great, science is great, and let's continue making discoveries! ;)

3 weeks ago 6 0 0 1
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Just realized, that I have never posted my artwork on bluesky! So here are some of my favorite pieces I got to create during my PhD for different projects from @mpimicrobiomarburg.bsky.social What a journey it has been :)

2 months ago 2 0 0 1
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Join IMPRS Principles of Microbial Life in Marburg,Germany
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🧬 World-class mentoring
πŸ§ͺ State-of-the-art research infrastructure
πŸ—“οΈ Apply until Jan 31, 2026
πŸ”— imprs-marburg.mpg.de/3197/JOIN-US
#PhDposition #WomenInSTEM

4 months ago 6 7 0 1

Very excited to finally share my PhD paper, about advancing #chloroplast #synbio through high-throughput plastome engineering of #Chlamydomonas.
Huge thanks to the whole team!
www.nature.com/articles/s41...

5 months ago 29 19 0 0

Oh no!

6 months ago 0 0 0 0

With this, the last bit of my PhD at @embl.org is finally out!
We developed salad (sparse all-atom denoising), a family of blazing fast protein structure diffusion models.
Paper: nature.com/articles/s42256-…
Code: github.com/mjendrusch/salad
Data: zenodo.org/records/14711580
1/🧡

6 months ago 24 9 1 0
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Just submitted my PhD thesis. Feeling kinda empty now...

7 months ago 3 0 0 0
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Modular Engineering of Thermo-Responsive Allosteric Proteins Thermogenetics enables non-invasive spatiotemporal control over protein activity in living cells and tissues, yet its applications have largely been restricted to transcriptional regulation and membra...

www.biorxiv.org/content/10.1...

11 months ago 14 7 0 0
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Excited to share a main project from my PhD, out now in
@naturecomms.bsky.social! πŸ“
We've designed and brought to life the β€œCORE cycle” – a new-to-nature pathway that provides a novel route for biological CO2 capture 🦠🌱
nature.com/articles/s41...
Take a look! Thread below... 🧡

1 year ago 39 17 4 4
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Thrilled to have been part of the 76th Mosbacher Kolloquium! Huge thanks to @gbmev.bsky.social for organizing such an engaging conference! @anastasiagtz.bsky.so and I were excited to share our insights on differential transport across membranes, and we're truly honored to receive the poster award!

1 year ago 5 1 0 1
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Computation-aided designs enable developing auxotrophic metabolic sensors for wide-range glyoxylate and glycolate detection - Nature Communications Auxotrophic metabolic sensors (AMS) are vital for bioengineering but are often time-consuming to develop. Here, the authors present a workflow for designing versatile AMS, demonstrating their use for ...

Really happy to share that our work on constructing six glyoxylate / glycolate sensors covering a three order of magnitude concentration range is out now in Nature Communications ! πŸ”₯

Read below to see how we developed the sensors and what they are good for πŸ₯³.

www.nature.com/articles/s41...

1 year ago 8 4 1 1
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One-carbon fixation via the synthetic reductive glycine pathway exceeds yield of the Calvin cycle - Nature Microbiology An engineered one-carbon-fixation pathway increases biomass yields of Cupriavidus necator compared with the Calvin cycle and can support future, sustainable bio-based production.

Super excited to see my main PhD project finally out in @naturemicrobiol.bsky.social www.nature.com/articles/s41.... We show for the first time that a synthetic and engineered pathway can indeed exceed nature at one-carbon fixation.

1 year ago 18 13 1 3
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Marburg. Sometimes it feels like I am working at Silent Hill. But it has its own charm ;)

1 year ago 7 0 2 0
Five generated protein structures coloured with a gradient from purple to teal. The structures are shaped and positioned to spell out the word "salad" – the name of the software described in the mentioned preprint – in all-capital letters.

Five generated protein structures coloured with a gradient from purple to teal. The structures are shaped and positioned to spell out the word "salad" – the name of the software described in the mentioned preprint – in all-capital letters.

New protein ML preprint from my PhD project.
We describe salad (sparse all-atom denoising), a family of efficient protein structure diffusion models and show that it works well on a bunch of protein design task previously described in the literature.

Preprint: www.biorxiv.org/content/10.1...

(1/N)

1 year ago 32 8 2 4