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Posts by Stoyo

Delighted to share our discoveries about one of the brain's neurotransmitter systems:
www.biorxiv.org/content/10.6...

Together with colleagues at the @alleninstitute.org, we have learned a lot about a tiny cluster of neurons in the brainstem locus coeruleus (LC) that releases norepinephrine (NE). 1

1 week ago 239 113 6 16
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2P-NucTag: On-demand phototagging for molecular analysis of functionally identified cortical neurons Neural circuits are characterized by genetically and functionally diverse cell types. A mechanistic understanding of circuit function is predicated on…

Paper Alert 🚨🚨🚨 Want to analyze your in vivo functionally characterized neurons with RNA-seq, spatial transcriptomics, immunolabeling, or ex vivo patch-clamp? Use our awesome 2P-NucTag approach! Great collab w/ @attila_losonczy & team, congrats to all. www.sciencedirect.com/science/arti...

2 weeks ago 1 1 0 0
Emotion Concepts and their Function in a Large Language Model

transformer-circuits.pub/2026/emotion...
This got press hate because of the word "emotions" but it is cool work. "Internal motivational states" serve as a form of working memory that helps animals organize their behavior, so why not ask if similar computational primitives help LLMs to do the same?

2 weeks ago 14 6 1 1

Congratulations, that’s so impressive! Any chance of combining with a calcium indicator and being able to separate somatic activity from local NE release under 2P?

3 weeks ago 1 0 1 0

1/8 New preprint alert!

How are signals from the heart encoded in the brain?
What could be the functional implications of cardioception?

We found that neurons in the posterior insular cortex are precisely tuned to heartbeats, and that this cardio-insular coupling supports emotion coding in mice.

4 weeks ago 87 39 2 5

New preprint!
Follow the thread to find out about the exciting work of an outstanding postdoc in my lab @merylneuro.bsky.social !!!

4 weeks ago 29 7 1 0

I really enjoyed the #COSYNE2026 (comp neuro) meeting - amazing talks and fantastic poster sessions! 👏

Still surprised how little mention there was of either evolution or development, though. It's worth keeping in mind that things are the way they are because they got that way! 😉

1 month ago 22 4 2 0

Excited to co-organize a #COSYNE2026 workshop with Marieke Scholvinck (@zeronoiselab.bsky.social) on March 17 in Cascais 🧠🌊

*Inferring neural latent states from behavior*

Featuring fantastic speakers across experimental & computational #neuroscience (list below 👇)

Hope to see many of you there! 👋

1 month ago 13 5 1 1
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Duration between rewards controls the rate of behavioral and dopaminergic learning - Nature Neuroscience Cue–reward learning rate scales proportionally with the time between rewards. Consequently, learning over a fixed duration is independent of the number of trials. This challenges trial-based dopamine ...

Very excited to post our paper led by @daburke.bsky.social www.nature.com/articles/s41... where we uncover a simple mathematical rule underlying how brains learn that a cue predicts a reward. 1/26

2 months ago 85 31 3 4
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🐭🧠 Can fUSI truly map canonical mouse resting-state networks — and how does it compare to fMRI?

I’m excited to share the work of my PhD in our new preprint!👉 doi.org/10.64898/202...

Go check it out — it’s time to expand your neuroimaging toolkit 🧠🚀

2 months ago 19 11 1 0
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Arteries are red, veins are blue,
“Strong coupling” seemed solid and true;
Yet blood runs high when spikes are few—
A troubled bond comes into view.

😬

www.nature.com/articles/s41...

2 months ago 0 0 0 0
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🔬🧠 Releasing the 1.0 version of #Suite2p and THE PAPER w/ @marius10p.bsky.social! Now with GPU acceleration. Want to use Suite2p but don’t have 100,000 neuron recordings? We show you how to get those with a standard 2p microscope #neuroscience #imaging #neuroAI www.biorxiv.org/content/10.6...

2 months ago 100 35 2 2
A functional influence based circuit motif that constrains the set of plausible algorithms of cortical function There are several plausible algorithms for cortical function that are specific enough to make testable predictions of the interactions between functionally identified cell types. Many of these algorithms are based on some variant of predictive processing. Here we set out to experimentally distinguish between two such predictive processing variants. A central point of variability between them lies in the proposed vertical communication between layer 2/3 and layer 5, which stems from the diverging assumptions about the computational role of layer 5. One assumes a hierarchically organized architecture and proposes that, within a given node of the network, layer 5 conveys unexplained bottom-up input to prediction error neurons of layer 2/3. The other proposes a non-hierarchical architecture in which internal representation neurons of layer 5 provide predictions for the local prediction error neurons of layer 2/3. We show that the functional influence of layer 2/3 cell types on layer 5 is incompatible with the hierarchical variant, while the functional influence of layer 5 cell types on prediction error neurons of layer 2/3 is incompatible with the non-hierarchical variant. Given these data, we can constrain the space of plausible algorithms of cortical function. We propose a model for cortical function based on a combination of a joint embedding predictive architecture (JEPA) and predictive processing that makes experimentally testable predictions. ### Competing Interest Statement The authors have declared no competing interest. Swiss National Science Foundation, https://ror.org/00yjd3n13 Novartis Foundation, https://ror.org/04f9t1x17 European Research Council, https://ror.org/0472cxd90, 865617

Our work with @georgkeller.bsky.social on testing predictive processing (PP) models in cortex is out on biorvix now! www.biorxiv.org/content/10.6... A short thread on our findings and thoughts on where we should move on from PP below.

2 months ago 49 16 2 1

Explicit and implicit modularity that emerges in simple neural network models even in the absence of anatomical constraints. Whether modularity emerges or not strongly depends on the geometry of the inputs and other factors. Extensively revised article with many new results. With @wjj.bsky.social

3 months ago 17 4 0 0
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Facial expressions less reflexive than previously thought A countenance such as a grimace activates many of the same cortical pathways as voluntary facial movements.

Facial expressions may involve an “everything, everywhere, all at once” type of coding in the brain, a new study suggests.

By @natmesanash.bsky.social

#neuroskyence

www.thetransmitter.org/emotion-proc...

3 months ago 18 9 0 1

They’ve found the dangerous parts uninteresting. Spending time in the wild likely enhances exploratory drive, and that seems like the more probable explanation for the results that the paper (and article about it) interpret, in my view unjustifiably, as reduced “fear”.

3 months ago 0 0 0 0

The elevated plus maze captures the compromise between two drives: the desire to stay it out of danger (“anxiety”) and the desire to explore a novel environment. When mice are returned to the EPM and spend more time in the safe areas they haven’t “developed a fear” /1

3 months ago 1 0 1 0
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Facial expressions less reflexive than previously thought A countenance such as a grimace activates many of the same cortical pathways as voluntary facial movements.

Emotionally driven behaviors may engage broader neuronal activity than previously thought—challenging the idea that facial expressions are largely reflexive and involuntary, a new study finds.

By @natmesanash.bsky.social

#neuroskyence

www.thetransmitter.org/emotion-proc...

3 months ago 19 3 0 1

It’s behind a paywall for some - text me if you’re curious

3 months ago 0 0 0 0
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The Study of Emotion in Other Animals (Chapter 8) - The Cambridge Handbook of Human Affective Neuroscience The Cambridge Handbook of Human Affective Neuroscience - October 2025

Recently published: The Study of Emotion in Other Animals - a primer on affective neuroscience in “nonhumans”. Framework and case studies for probing emotions in the brain. Cambridge Handbook of Human Affective Neuroscience. Thanks to @gogolla.bsky.social!

www.cambridge.org/core/books/a...

3 months ago 3 0 2 0

But really I’m confused and waiting for Ralph Adolphs’ new book to resolve this once and for all

3 months ago 1 0 0 0

Neuropeptide-dependent scaling/persistence of a valenced, (probably) generalizable internal state. It lets the organism compare otherwise incommensurable motivational concerns (hunger and pain). Certainly seems biomarker-ish, and emotion-like. Tempting to require subjective self-report, but why

3 months ago 1 0 0 0

Great! Does one bite the bullet and call this an emotion? It walks and quacks. Or is the framework too capacious, forcing us to use a conventional term in a confusing way. Like “valence”/chemistry and “stress”/physics, maybe we should port a new term into neuro, smth evocative that isn’t overloaded

3 months ago 4 0 1 0
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How heterogeneity shapes dynamics and computation in the brain Much effort has been spent clustering neurons into transcriptomic or functional cell types and characterizing the differences between them. Beyond sub…

"My New Year's Resolution is to find a principled way to think about all those cell types in the brain"

Why friend, you are in luck, because @rgast.bsky.social has just the perspective for you: www.sciencedirect.com/science/arti...

3 months ago 67 26 1 1

One interesting thing about this finding: People with ADHD commonly experience issues with time perception, which Ritalin is able to restore. Notably, the networks observed here are the same ones we see in timing studies (including insula!)

3 months ago 13 6 3 0
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Rethinking the centrality of brain areas in understanding functional organization Nature Neuroscience - Parcellation of the cortex into functionally modular brain areas is foundational to neuroscience. Here, Hayden, Heilbronner and Yoo question the central status of brain areas...

New Perspective from myself, Sarah Heilbronner and @myoo.bsky.social . “Rethinking the centrality of brain areas in understanding functional organization” in Nature Neuroscience. 🧵

rdcu.be/eVZ1A

3 months ago 253 99 9 10

Oh, no reference, was just trying to start a cortico-cortical feud. Brain areas that compete for glory with the area that I work on need to be shamed, ridiculed, suppressed. Insular chauvinism. In our aggressive frontostriatal expansion campaign the ACC will be one of the first areas we annex

4 months ago 0 0 0 0
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“Anterior cingulate cortex”. As if that’s a real place. You can tell it’s fake because neurons aren’t red. #ThereIsOnlyInsula

4 months ago 1 0 1 0
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Insular cortex predictions regulate glucose homeostasis Brain-body interactions are essential for physical and emotional homeostasis. The brain uses information from the external world to predict upcoming bodily changes. This process involves interoceptive...

lab preprint! Interopceptive predictions are central to many brain-body interactions theories, but it's unclear if/how they affect bodily physiology. We (fearless Einav Litvak et al) show that insular cortex predictions are essential for glucose homeostasis-THREAD.. www.biorxiv.org/content/10.6...

4 months ago 78 30 3 2

We could try, but we would fail. I just don’t think that’s how brains work. Others will no doubt disagree.

4 months ago 0 0 0 0