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Posts by MRC Centre for Global Infectious Disease Analysis

SMRS: advocating a unified reporting standard for surrogate models in the artificial intelligence era Surrogate models are widely used to approximate complex systems across science and engineering to reduce computational costs. Despite their widespread adoption, the field lacks standardisation across ...

Read their position paper advocating for a unified reporting standard for surrogate models in the artificial intelligence era 👇
doi.org/10.48550/arX...
@smhall97.bsky.social @imperialcollegeldn.bsky.social @imperialsph.bsky.social @liza-semenova.bsky.social @ox.ac.uk

1 month ago 1 1 0 0
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✨ NEW EPISODE ✨ #ScienceInContext This week @eonore.bsky.social speaks with @liza-semenova.bsky.social about surrogate models and why unified reporting standards matter more than ever in the age of AI
youtu.be/s-hSIjpHat0
@smhall97.bsky.social @imperialcollegeldn.bsky.social @imperialsph.bsky.social

1 month ago 1 0 1 1
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Read about the opportunities and challenges of global wastewater surveillance for pathogens with pandemic potential published in The Lancet Microbe 👇
doi.org/10.1016/j.la...

1 month ago 0 0 0 0
Home | WaSPP

Find out more about the Wastewater Surveillance for Pandemic Prevention WaSPP network 👇
www.waspp.org

1 month ago 0 0 1 0
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✨NEW EPISODE✨ #ScienceInContext This week @eonore.bsky.social speaks with Prof Nicholas Grassly & Dr Joyce Akello about wastewater surveillance as early warning of viruses with pandemic potential & the WASPP Network👇
youtu.be/7sbL-Eq9U7A
@imperialcollegeldn.bsky.social @gatesfoundation.bsky.social

1 month ago 1 1 1 0
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Always wanted to learn about mathematical models of infectious diseases?

💼 This short course might be for you!
✨We offer a limited number of scholarships for participants from low- & middle-income countries
Find out more and apply 👇 www.imperial.ac.uk/mrc-global-i...
@imperialcollegeldn.bsky.social

1 month ago 1 1 1 0
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A systematic review and meta-analysis of Zika virus epidemiology - Nature Health A systematic review including 574 studies extracts information about transmissibility, epidemiological delays and outbreaks for Zika virus disease at global scale.

Read more about this work in the @natureportfolio.nature.com Health publication👇
doi.org/10.1038/s443...
@imperialcollegeldn.bsky.social

2 months ago 1 1 0 1
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NEW EPISODE #ScienceInContext! This week @eonore.bsky.social speaks with Anna Vicco & Kelly McCain about Zika outbreaks, congenital Zika syndrome & next steps investigating the cross-reactivity of Zika with dengue 👇

youtu.be/u_7LpuG1Vpk
@imperialcollegeldn.bsky.social @anne-cori.bsky.social

2 months ago 4 0 1 0
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Historical and current spatiotemporal patterns of wild and vaccine-derived poliovirus spread - Nature Microbiology Vaccine-derived poliovirus type 2 currently spreads similarly to historical poliovirus—unidirectionally across neighbouring countries at a median velocity of 2.3 km per day. International borders are ...

Find out more about historical and current spatiotemporal patterns of wild and vaccine-derived poliovirus spread in this Nature Microbiology paper 👇
@imperialcollegeldn.bsky.social @imperialsph.bsky.social
doi.org/10.1038/s415...

4 months ago 0 0 0 1

NEW EPISODE #ScienceInContext! This week Dr @eonore.bsky.social speaks with Dr Darlan Candido about historical transmission of poliovirus, immunity, cross border transmission and data availability👇
@imperialcollegeldn.bsky.social @imperialsph.bsky.social
youtu.be/SvRPfyHdNTg

4 months ago 2 0 1 0
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Find out more about robust phylodynamic inference and model specification for HIV transmission dynamics in this Elsevier Epidemics publication 👇
@imperialcollege @ImperialSPH @erikmvolz @UCSanDiego
🧵2/2
doi.org/10.1016/j.ep...

4 months ago 2 0 0 0

It is #WorldAIDSDay! For this special #ScienceInContext Dr Fabricia Nascimento & Prof Sanjay Mehta join @eonore.bsky.social to speak about phylodynamic inference, HIV transmission, migration, genome sequencing & ethics
@imperialcollegeldn.bsky.social @ucsandiego.bsky.social 🧵1/2
youtu.be/SzdAhdjJuAE

4 months ago 5 2 1 0
Antimicrobial resistance portal Query, filter and download experimental AMR records and in silico predicitions of antimicrobial resistance

Find out more & visit the CABBAGE platform 👇
@imperialcollegeldn.bsky.social @ebi.embl.org
www.ebi.ac.uk/amr

5 months ago 2 0 0 0

NEW EPISODE #ScienceInContext! It is World Antimicrobial Resistance #AMR Week. @eonore.bsky.social speaks with Dr Emily Dickens about CABBAGE, a new portal for comprehensive, global, curated AMR data for @who.int priority pathogens👇
youtu.be/G7EdE8Yb9rA
@imperialcollegeldn.bsky.social @ebi.embl.org

5 months ago 3 0 1 0
Optimizing nanopore adaptive sampling for pneumococcal serotype surveillance in complex samples using the graph-based GNASTy algorithm An international, peer-reviewed genome sciences journal featuring outstanding original research that offers novel insights into the biology of all organisms

Surveillance getting GNASTy! Improving our ability to detect variants that haven’t been seen before! Optimizing nanopore adaptive sampling for pneumo surveillance in @genomeresearch.bsky.social 👇 doi.org/10.1101/gr.2... @imperialcollegeldn.bsky.social @ox.ac.uk @rebecca-and.bsky.social @ebi.embl.org

5 months ago 4 1 0 0

NEW EPISODE #ScienceInContext! @eonore.bsky.social joined by Dr Samuel Horsfield on diagnostic & surveillance methods & GNASTy improving our ability to detect variants that haven’t been seen before👇
@imperialcollegeldn.bsky.social @ox.ac.uk @rebecca-and.bsky.social @ebi.embl.org
youtu.be/X7I-ZVyw9dw

5 months ago 2 1 1 2
Validate User

Read the full publication by Nic Steyn & @krisparag.bsky.social on the robust uncertainty quantification in popular estimators of the instantaneous reproduction number in the @amjepi.bsky.social👇
doi.org/10.1093/aje/...
@imperialcollegeldn.bsky.social @ox.ac.uk @imperialsph.bsky.social

5 months ago 0 0 0 0

NEW EPISODE #ScienceInContext! This week, Dr @eonore.bsky.social speaks with Dr @krisparag.bsky.social about methods to estimate the instantaneous reproduction number and approaches to estimate uncertainty 👇
@imperialcollegeldn.bsky.social @ox.ac.uk @rebecca-and.bsky.social
youtu.be/4DGD8ZWz4vg

5 months ago 2 0 1 0
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PAC-CI - Accueil

Find out more about the @PacciProgramme 👇
web.pac-ci.org

5 months ago 0 0 0 0

NEW EPISODE #ScienceInContext this week @eonore.bsky.social speaks with Dr Romain Silhol, Dr Serge Niangoran and Kelly McCain to speak about a modelling workshop on HIV, HPV & cervical cancer in Côte d'Ivoire👇
youtu.be/N6w6Q73sidI

5 months ago 1 0 1 0
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International collaborative effort to understand dengue and Zika | Imperial News | Imperial College London An international team launched the DeZi network to understand how the viruses spread, interact, and cause disease across Africa and Asia.

Find out more about this global initiative & insights from the team aiming to better understand dengue & Zika transmission, characterise arbovirus genetic diversity to inform public health strategies 👇
www.imperial.ac.uk/news/269973/...
@imperialcollegeldn.bsky.social sky.social @nfaria.bsky.social

5 months ago 4 3 1 0
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International collaborative effort to understand dengue and Zika | Imperial News | Imperial College London An international team launched the DeZi network to understand how the viruses spread, interact, and cause disease across Africa and Asia.

Today we're kickstarting the Dengue & Zika Immunology & Genomics Multi-Country (DeZi) Network funded by @wellcometrust.bsky.social with contributions from @temasek.bsky.social @neasg.bsky.social #UNITEDengue
@imperialcollegeldn.bsky.social @nfaria.bsky.social
www.imperial.ac.uk/news/269973/...

5 months ago 9 6 1 0
Ep 134 Science in Context   Fungal disease with Dr Harry Chown
Ep 134 Science in Context Fungal disease with Dr Harry Chown YouTube video by MRC Centre for Global Infectious Disease Analysis

NEW EPISODE #ScienceInContext! This week @eonore.bsky.social speaks with @chownbioinf.bsky.social about fungal disease, Aspergillus fumigatus and interactions with the soil it lives in. Harry shares his passions and insights from his work - one to watch 👇
youtu.be/ariW8UKVv-M

5 months ago 5 2 0 0
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Read the full paper published in @thelancet.com HIV on the probability of vertical HIV transmission: a systematic review and meta-regression, here 👇
doi.org/10.1016/S235...

6 months ago 2 0 0 0

NEW EPISODE #ScienceinContext! This week, @eonore.bsky.social is joined by @mkwalters3.bsky.social to speak about HIV, vertical transmission, the impact of starting ART before & during pregnancy, and the importance of testing & treatment throughout pregnancy and breastfeeding 👇
youtu.be/xEEWT2QYkf0

6 months ago 1 1 1 0
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Global risk of selection and spread of Plasmodium falciparum histidine-rich protein 2 and 3 gene deletions - Nature Medicine A modeling approach to assess the global risk of Plasmodium falciparum histidine-rich protein 2 and 3 gene deletions identifies ten priority African countries for surveillance and could inform malaria control policies.

NEW PUBLICATION! Read this full paper published today in @natureportfolio.nature.com Medicine on global risk of selection and spread of Plasmodium falciparum histidine-rich protein 2 and 3 gene deletions👇

www.nature.com/articles/s41...

6 months ago 3 1 0 0

NEW EPISODE #ScienceInContext! @eonore.bsky.social is joined by @ojwatson.bsky.social @imperialcollegeldn.bsky.social to speak about the spread of hrp2/3 deletions, collaboration with the @who.int & what this research means for malaria control within the current funding climate👇
youtu.be/HhbD6rPtZSI

6 months ago 0 0 1 0
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Quantifying the impact of a broadly protective sarbecovirus vaccine in a future SARS-X pandemic - Nature Communications Broad-spectrum vaccines have been proposed as a tool for rapid response to emerging infectious disease threats and are in pre-clinical development. Here, the authors use mathematical modelling to assess the potential impacts of broadly protective sarbecovirus vaccines for a hypothetical “SARS-X” outbreak.

NEW PUBLICATION! Check out this work in Nature Portfolio Communications quantifying the impact of a broadly protective sarbecovirus vaccine in a future SARS-X pandemic 👇
doi.org/10.1038/s414...

6 months ago 1 0 0 0
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Quantifying the impact of a broadly protective sarbecovirus vaccine in a future SARS-X pandemic - Nature Communications Broad-spectrum vaccines have been proposed as a tool for rapid response to emerging infectious disease threats and are in pre-clinical development. Here, the authors use mathematical modelling to assess the potential impacts of broadly protective sarbecovirus vaccines for a hypothetical “SARS-X” outbreak.

NEW PUBLICATION! Check out this work in Nature Portfolio Communications quantifying the impact of a broadly protective sarbecovirus vaccine in a future SARS-X pandemic 👇
doi.org/10.1038/s414...
@imperialcollegeldn.bsky.social @imperialsph.bsky.social

6 months ago 2 1 0 0
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CONGRATULATIONS! We celebrate the successful viva of Janetta Skarp who focussed on the gaps in knowledge regarding the quality of countries' outbreak response & the costs of outbreak response measures, & how these gaps could be addressed
@imperialcollegeldn.bsky.social @imperialsph.bsky.social

6 months ago 1 0 0 0