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Posts by Peter Innes

This image illustrates how combining perennial genes with prostrate growth genes allows cultivated rice to mimic wild rice.

This image illustrates how combining perennial genes with prostrate growth genes allows cultivated rice to mimic wild rice.

Wild rice is a perennial, creeping plant. The secret to its perennial growth habit lies in a developmental reversal directed by small RNAs. This image illustrates how combining perennial genes with prostrate growth genes allows cultivated rice to mimic wild rice.

Learn more: https://scim.ag/40GOjDb

1 month ago 80 36 0 4
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Storm-induced mass mortality results in both immediate and long-term consequences for a migratory songbird Nature Ecology & Evolution - Combining 27 years of citizen science data with whole-genome sequencing, the authors show that mass mortality of purple martins caused by a severe winter...

Spring is arriving, but there's still snow in the forecast! How do late #winter storms affect our migratory #birds? Out now in @natecoevo.nature.com, we ask that Q with 25+yrs of #CitizenScience data and ~400 museum specimens collected after the 2021 Great TX Freeze: rdcu.be/e7aUy
#EcoEvo #evolution

1 month ago 28 17 1 0
Padilla, Young, Bice, Khanna Introduce America’s Living Library Act to Strengthen U.S. Biotech Innovation - Senator Alex Padilla WASHINGTON, D.C. — Today, U.S. Senators Alex Padilla (D-Calif.) and Todd Young (R-Ind.), along with U.S. Representatives Stephanie Bice (R-Okla.-05) and Ro Khanna (D-Calif.-17), Commissioners on the N...

In an era of highly partisan politics in the US, I want to highlight this promising bi-partisan bill to study biodiversity genomics in US National Parks. Consider sending a letter of support to these reps for the Living Library Act! www.padilla.senate.gov/newsroom/pre...

1 month ago 5 2 0 0

You know, it’s hard to keep them straight

1 month ago 1 0 0 0

Thanks @elinck.bsky.social @mdcarling.bsky.social for the opportunity to assemble this genome, which will be an important resource for future comparative and pop gen work. Given its close and iconic mutualism with whitebark pine, Clark’s Nutcracker is basically a plant, hence my role in the project

1 month ago 5 0 1 0
Phylogeny and biogeographic distribution of Delphinium sect. Diedropetala.

Phylogeny and biogeographic distribution of Delphinium sect. Diedropetala.

Geography and admixture shape the genome‐scale phylogeny of North American #Delphinium

📖 nph.onlinelibrary.wiley.com/doi/10.1111/...
by Meek et al.

Photo credit: Delphinium scaposum & Delphinium carolinianum www.wildflower.org/texas; Delphinium viridescens www.burkeherbarium.org

1 month ago 9 4 0 0
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Forecasting Genomic Change with Time Series Sequence Data | The American Naturalist: Vol 207, No 3 Abstract Humans drive species evolution in numerous ways, ranging from the deliberate interventions of domestication to the indirect but far-reaching impacts of climate change. Anticipating how specie...

This paper doi.org/10.1086/739046 by @jacksondanny.bsky.social et al, plus the rest of the hot new Am Nat special issue on genomic forecasting

1 month ago 1 1 1 0
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Evolutionary roles of recombination suppression.

Evolutionary roles of recombination suppression.

Recombination suppression in plant adaptation and speciation

#TansleyReview by Zhang et al.

nph.onlinelibrary.wiley.com/doi/10.1111/...

#plantscience

2 months ago 8 4 0 0
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Genomic Evidence for Local Adaptation to Elevation and Climate Sheds New Light on Variable Responses to Global Change in American Pikas (Ochotona princeps) Click on the article title to read more.

my Ph.D. student Lizzy & I contributed to this perspective on range-wide signatures of local adaptation in American Pika—her first coauthuored paper: doi.org/10.1111/mec....

2 months ago 16 5 2 0

Just saw this new preprint - includes flow ctyometry on 45,000 silica-dried samples for 1135 species - this is amazing and such a great resource for anyone attempting to do flow cytometry: www.biorxiv.org/content/10.6...

2 months ago 14 6 1 1
Fig. 1 Evolution and potential contributions of alternative splicing (AS) along the speciation continuum.

Fig. 1 Evolution and potential contributions of alternative splicing (AS) along the speciation continuum.

#TansleyInsight: Evolutionary #genetics of alternative splicing in #plants

@peterinnes1.bsky.social, Nolan Kane & @chriscrsmith.bsky.social
👇

📖 nph.onlinelibrary.wiley.com/doi/10.1111/...

#LatestIssue

3 months ago 14 6 0 0
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Can we predict gene expression evolution? In flour beetles, transcriptome-wide selection predicts expression change, with indirect selection acting strongest on pleiotropic, network-central genes—linking co-expression architecture to adaptation.
academic.oup.com/evlett/artic... Photo: Udo Schmidt

4 months ago 20 8 0 1
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Why do selfing rates vary across a species’ range? In alpine monkeyflower, self-fertilization increases away from the range center, supporting the abundant center hypothesis over historical range expansion in shaping reproductive assurance.
academic.oup.com/evlett/advan...
Photo Credit: Brewbooks

4 months ago 21 6 0 0
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I've slowly been reformatting notes from my population and conservation genetics course at Montana State University into a web book—a rough draft is now live here: elinck.org/popgen_conge...

3 months ago 133 61 1 0
Sites of sunflower multi-environment trials.

Sites of sunflower multi-environment trials.

Climate drives variation in optimal phenology

Clark et al.

nph.onlinelibrary.wiley.com/share/MCQ8GR...

4 months ago 6 2 0 0
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Thanks nature news for featuring our recent preprint on 𝘐𝘯𝘤𝘦𝘯𝘥𝘪𝘢𝘮𝘰𝘦𝘣𝘢 led by @hbrappap.bsky.social

(check out preprint here: doi.org/10.1101/2025...) #protistsonsky

4 months ago 31 10 1 0

🌻 Sharing this preprint where we assembled 3 new chromosome-level genomes, including the first for Asteraceae's South American sister Calyceraceae! Asteraceae uses all the tricks when it comes to being the most ecologically successful family of flowering plants. www.biorxiv.org/content/10.1...

5 months ago 6 7 0 3

Excited to share our review on alternative splicing evolution, with @peterinnes1.bsky.social and Nolan Kane!

5 months ago 9 3 0 0
Evolution and potential contributions of alternative splicing (AS) along the speciation continuum.

Evolution and potential contributions of alternative splicing (AS) along the speciation continuum.

Evolutionary #genetics of alternative splicing in plants

#TansleyInsight by @peterinnes1.bsky.social, Nolan C. Kane and @chriscrsmith.bsky.social

nph.onlinelibrary.wiley.com/doi/10.1111/...

#PlantScience #speciation

5 months ago 8 2 0 0

Thanks to @chriscrsmith.bsky.social for the invitation to write this Tansley Insight together! First pub in one of my favorite journals @newphyt.bsky.social 🌱 🥹

5 months ago 6 2 0 0
Applied Biostatistics

Proud of the latest edition of my free intro biostats book.

gitrepo: github.com/ybrandvain/b...
book: ybrandvain.github.io/biostats/

Not complete but at a good point to take a break, and I think its quite usable

dm me with comments , ideas etc

5 months ago 66 46 1 1
Genomic insights into the origin of ecotypes

@ecoevorxiv.bsky.social Excited to read this review, “Genomic insights into the origin of ecotypes”, by Johannesson et al ecoevorxiv.org/repository/v...

6 months ago 1 0 0 0

Check out our new preprint! This was such a great paper to work on with @stairwaytokevin.bsky.social and the rest of the team!

6 months ago 4 2 0 0
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Plant genome sequencing needs to go tropical Nature Reviews Biodiversity - Whole-genome plant sequencing is heavily biased towards species from temperate regions and species with utilitarian values. An expansion of efforts to include tropical...

Plant genome sequencing needs to go tropical. Check out this commentary I wrote with Felipe Zapata (UCLA) and María José Sanín (Montgomery Botanical Center) out today in Nature Reviews Biodiversity 1/5 www.nature.com/articles/s44...

8 months ago 5 2 2 0
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Research Assistant/Technician 3 Staff - Non Union Job Category Non Union Technicians and Research Assistants Job Profile Non Union Salaried - Research Assistant /Technician 3 Job Title Research Assistant/Technician 3 Department Rese...

The Todesco lab at MSL UBC is looking for a Research Tech to help us run the lab and do fancy science! Good wet lab skills and enthusiasm for plant research are required, experience with genomics and bioinformatics is a plus. See ad below, please spread the voice! 🧬🌻🧪🌱🔬🧫
tinyurl.com/5bnfyadw

8 months ago 2 1 0 1
Postdoctoral Research Fellow The department of Biology is a large, unified department with strong undergraduate degrees, nationally-ranked graduate programs, and world-class research spanning the breadth of biological questions a...

Hello bluesky community!

I'm hiring a postdoc to do machine learning in population genetics.
Starting to build up a lab at Indiana University Bloomington where I just started a faculty position.
Apply with the below link: indiana.peopleadmin.com/postings/30325

8 months ago 26 45 1 1
Postdoctoral Fellow in Tomatillo Evolution

Big news! We are recruiting a postdoc to work on tomatillo evolution: jobs.colorado.edu/jobs/JobDeta.... The clade containing tomatillos and its allies (ca 300 spp) has evolved lantern fruits at least 25 times - we want to know why! Join us @rociodeanna.bsky.social & @caschenck-bio.bsky.social

8 months ago 123 108 2 3

The final version of our paper on the evolution of supergenes and mechanisms underlying distyly in Linum is now up at New Phytologist doi.org/10.1111/nph....

9 months ago 14 4 0 1
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maybe my favorite paper I've written, I have a synthesis out today early access in @asn-amnat.bsky.social today that attempts to answer a simple but slippery question: what is an elevational range? doi.org/10.1086/737130

10 months ago 119 43 6 2