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Posts by Matt Doyle

Thank you so much for your kind words!

3 weeks ago 1 0 0 0

What a fascinating story is hiding in bioRxiv!! An elaborate work of @doylemt1.bsky.social an co-workers to understand the function of the bacterial TAM machinery ❤️‍🔥 and here it is, a rich body of evidence for the "ancient" bridge for the lipid transfer 👇

www.biorxiv.org/content/10.6...

3 weeks ago 8 4 1 0
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Join us on campus on Thursday, 26 March 2026 at 1pm for a seminar by Dr Matthew Doyle @doylemt1.bsky.social, Senior Lecturer from the Faculty of Medicine and Health, The University of Sydney. Details: rb.gy/4uw4uz

1 month ago 1 2 0 0

And now published as an Observation! Many congrats to @weeboont.bsky.social for discovering that AsmA superfamily proteins, YhdP/TamB/YdbH, localize to the cell poles in E. coli, curiously AFTER division has occurred! 1/3 #MicroSky
journals.asm.org/doi/10.1128/...

1 month ago 12 6 1 0

My predictions are that grant delays have a much more severe impact on Australia's productivity than any real foreign interference enabled by any ARC grants.... maybe the delay was always the intended interference.

2 months ago 6 2 2 0
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Grant delays feared as ARC ramps up ‘due diligence’ Researchers brace for renewed funding uncertainty as security checks prove ‘more time-consuming than imagined’

DELAY: the work associated with protecting Australian research from foreign interference are causing hold ups and issues for grant applications. www.timeshighereducation.com/news/grant-d... “The requirements we now have to go through…are more extensive and time-consuming than we had imagined,”

2 months ago 2 2 0 1
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Antiparallel stacking of Csu pili drives Acinetobacter baumannii 3D biofilm assembly - PubMed Many Gram-negative nosocomial pathogens rely on adhesive filaments, known as archaic chaperone-usher pili, to establish stress- and drug-resistant, multi-layered biofilms. Here, we uncover the mechanism by which these pili build three-dimensional (3D) biofilm architectures. In situ analyses of Acine …

A. baumannii is one of the most notorious multidrug-resistant pathogens, capable of forming drug-tolerant biofilms that make infections exceptionally difficult to treat. But how are these complex microbial fortresses built? Just published in Nat Comms. pubmed.ncbi.nlm.nih.gov/41654547/

2 months ago 19 5 1 2

Beautiful work Deb! Check out these structures? Biofilms are very interesting. 🧶🧬

2 months ago 4 3 1 0
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Fabien Munder - New strategies to fight AMR.

Bacterial competition via L-type pyocins; targeting (1) BamA EC loop 6, (2) beta-strand 1.

Inhibit beta barrel assembly by blocking the BAM barrel lumen. Increase cell permeability - holes in the OM. 👏

(EMReady post-processing) 🤓

#lorneproteins2026

2 months ago 10 5 0 0

Certainly very beautiful work!

2 months ago 1 0 0 0

Really beautiful cryoET of periplasmic flagella structures and amazing animations

2 months ago 10 3 1 0
Kate Michaels at Lorne Protein

Kate Michaels at Lorne Protein

Kate Michie talking about her work on archaeal cytoskeleton. @lorneproteins.bsky.social

2 months ago 16 3 2 1
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Neg charged lactate binds pocket when His positively charged. Lactate binds favourably, but only lactic acid can leave.

Proton enters to charge His, attracts negative lactate, proton neutralises lactate to lactic acid, then LA leaves.

2 months ago 3 2 1 0
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First speaker Ashleigh Kropp of the most fun session of the Lorne Protein Meeting the Anders Young Investigators session. @lorneproteins.bsky.social

2 months ago 12 2 1 0
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Yan Jiang is the next Anders session speaker presenting her work on the SLC1A transporter. @lorneproteins.bsky.social

2 months ago 10 3 0 0
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Emily Furlong (UQ alumnus 😄) talking about her new work on ABC transporters. @emfurlong.bsky.social @lorneproteins.bsky.social

2 months ago 17 4 1 0
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Session 7 ⚡️🌩 talks time!! Jack Zeng Unravelling Promiscuity - OCT1 gating - structures of ligand bound states. Interrogating binding and transport specificity and mechanism.

#lorneproteins2026

2 months ago 4 3 0 1

No, I was wrong. The ARC just posted on X – you know, the platform that whose offices have been raided by French police because it produces and hosts child exploitation materials? Yes, that X.

2 months ago 16 2 0 1

Just noting that ARC is still on X/Twitter. Despite it now being clear that that platform produces child exploitation materials, they remain active there.

If you interact with ARC staff, I really think they need to answer this question. It's moved being simply "disconnected from researchers" to … 🤢

3 months ago 31 9 3 1
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The Resistance-Nodulation-Division efflux pump EefABC is highly conserved within lineages of E. coli commonly associated with infection Resistance-nodulation-division (RND) efflux pumps confer multidrug resistance in Gram-negative bacteria and are critical for many physiological functions including virulence and biofilm formation. The...

The coolest finding of my PhD is finally out! E. coli has a 7th RND pump that is present in phylogroups B2/D/E/F but absent in A/B1/C. As a result EefABC has been absent in all K-12 RND studies! Co-authored by the very talented Dr. Lizzy Darby. @jessicamablair.bsky.social
doi.org/10.1099/mgen...

3 months ago 22 5 2 1

Finally a big shout out to Laurence Luu (@laurenceluu.bsky.social) at UNSW who helped us analyse the effect of our inhibitor against Australian clinical isolates of B. pertussis!

(6/6)

3 months ago 1 0 0 0

This work is only a first step but it shows the potential for the development of pan-anti-virulence drugs. This strategy could be used to disarm pathogens without killing them, and thereby reduce the selective pressure for the development of resistance.

(5/6)

3 months ago 1 0 1 0

Our inhibitor potently blocked secretion of essential virulence factor filamentous hemagglutinin from multiple species. Our data suggests that our inhibitor works by binding to a conserved groove that stabilises the inactive state of FhaC.

(4/6)

3 months ago 1 0 1 0

To explore the potential of this "blue sky" idea my student Alfred Hartojo (@itzfredz.bsky.social) teamed up with the lab of Richard Johnson at ECU.

We used Baker Lab's RFdiffusion to design an inhibitor of FhaC — an essential TPS transporter for Whooping cough (Bordetella pertussis).

(3/6)

3 months ago 1 0 1 0

What if we had a drug that suppresses the virulence of many bacterial species? A broad-spectrum anti-virulence drug would provide clinicians with more options for critical infections that require rapid intervention prior to the identification of the infecting species.

(2/6)

3 months ago 1 0 1 0
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First inhibitor of a bacterial two-partner secretion system. Two-partner secretion system transporter proteins (TpsB) are widely conserved across Gram-negative pathogens. TpsB family proteins secrete exoprotein virulence factors that perform a myriad of functions such as adhesion and immune modulation. Despite their incredible importance in bacterial infectious disease, TpsB inhibitors have not yet been discovered. Here, we describe a potent inhibitor of FhaC, a TpsB protein produced by Bordetella spp . FhaC secretes the exoprotein FhaB that is essential for the establishment of whooping cough. We designed a peptide called P1 that we predicted would prevent substrate binding and lock FhaC in a secretion-inactive state. Simulations and biochemical assays supported our hypothesis and identified interactions important for P1 binding to FhaC. Strikingly, we observed that the peptide strongly inhibited FhaB secretion from clinical isolates and broadly reduced correlates of virulence. Together, this work provides a strong case for further development of a novel class of anti-TpsB anti-virulence compounds. ### Competing Interest Statement The authors have declared no competing interest. National Institute of Allergy and Infectious Diseases, R21AI180112

💊 We are excited to share our preprint that describes an inhibitor of the widespread and highly conserved Two-Partner Secretion (TPS) system that is critical for Gram-negative pathogens to export a multitude of diverse virulence factors.

(1/6)

www.biorxiv.org/content/10.6...

3 months ago 25 9 1 1
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Happy to finally share the amazing results of our long-term collaboration with Karin Reinisch’s lab on how bridge lipid-transfer proteins (BLTPs) cooperate with partner proteins to orchestrate lipid delivery. A quick thread (1/7)
www.biorxiv.org/content/10.6...

3 months ago 102 39 5 1
ARC grant scheme timetable, including open, close and anticipated outcome announcement dates for Expressions Of Interest and full applications, plus rejoinder periods and selection meeting dates.

ARC grant scheme timetable, including open, close and anticipated outcome announcement dates for Expressions Of Interest and full applications, plus rejoinder periods and selection meeting dates.

#ARCschedule Jan26 update

ARC announced huge delays & 3-month announcement windows (used to be 2 weeks).

Delay in months per scheme:
🔹LP25: 1–4
🔹IC/IH26: 1–4
🔹FT26: 1–3
🔹LP26: 2.5–5.5
🔹LE27: 2–5
🔹DE27: 1.5–4.5
🔹DP27: 3–6

Just … appalling. Unworkable.

Data ▶️ docs.google.com/spreadsheets...

3 months ago 6 5 0 1
Black text on white background. Screenshot of ARC’s Network Message regarding delays to grant announcements because of new security arrangements.

Black text on white background. Screenshot of ARC’s Network Message regarding delays to grant announcements because of new security arrangements.

⁉️The ARC has delayed outcomes of ALL grants 1–4 months & increased scheduled outcome windows from 2 weeks to 3 months!

This reverses 4 years of progress in providing greater certainty & ability to plan for researchers, their families & unis.

Their excuse? Security checks under new ARC legislation👇

3 months ago 61 51 6 20

The ARC’s processes are back to being farcical, @jasonclaremp.bsky.social

You advocated for a streamlined, efficient, faster ARC, but all that progress has been undone.

How can they claim to fund “innovation” with more than a year between initial proposal & outcomes? It should be 6 months, not 16!

3 months ago 34 22 0 2