It's out! Happy to present ITEC, a semi supervised algorithm with an extremely low error rate that can track cells in files of any size (think Terabytes!). We used it in many organisms, including zebrafish, to study how organs form and linked it to gene expression www.biorxiv.org/content/10.6... +🧪

Whole-embryo spatial transcriptomics at subcellular resolution from gastrulation to organogenesis Gene expression patterns underlie development, but their systematic detection in whole embryos has remained elusive. We introduce a whole-embryo imaging platform using multiplexed error-robust fluores...

Very happy to see this out. 👏 @yinanwan.bsky.social
Bogdan Bintu and team.
Whole-embryo spatial transcriptomics at subcellular resolution from gastrulation to organogenesis | free link Science www.science.org/eprint/5MHTM...

Plastic landmark anchoring in zebrafish compass neurons Nature - Using two-photon microscopy with a panoramic virtual reality setup, how head direction cells in larval zebrafish integrate visual landmarks and optic flow to track orientation is revealed.

1/6: New publication from the lab: “Plastic landmark anchoring in zebrafish compass neurons” by Ryosuke Tanaka (@ryosuketanaka.bsky.social) and Ruben is available here:
rdcu.be/eX1L4

Asteroids, antibiotics and ants: a year of remarkable science Highlights from News & Views published in 2025.

Very proud to see our paper selected as one of Nature’s 2025 highlights!
@johanneskappel.bsky.social @jlarsch.bsky.social @mpiforbi.bsky.social

www.nature.com/articles/d41...

This scientist found a new trick of the immune system by digging through cellular rubbish Yifat Merbl is part of Nature’s 10, a list of people who shaped science in 2025.

“Up ’till now, we couldn’t detect it, because we didn’t look at the garbage cans of cells.”

Yifat Merbl found a new trick of the immune system, and is part of Nature’s 10, a list of people who shaped science in 2025

go.nature.com/3XQWoUt

Visual motion and landmark position align with heading direction in the zebrafish interpeduncular nucleus - Nature Communications How are various visual signals integrated in the vertebrate brain for navigation? Here authors show that different spatial signals are topographically organized and align to one another in the zebrafi...

(1/n) We are excited to share our new paper in Nature Communications, by Hagar Lavian (@hlavian.bsky.social) and team, revealing how the zebrafish brain integrates visual navigation signals! www.nature.com/articles/s41...

Very excited to share this thread on our recent paper! We show how Zebrafish integrate visual navigation signals in aligned topographic maps. Full thread below🧵

Folks, it is finally out! Our paper on T2T assemblies of the zebrafish genome is on BioRxiv:
www.biorxiv.org/content/10.1...

Job Alert! The Institute for Neuro- and Behavioural Biology at the Faculty of Biology @uni-muenster.de invites applications for a Full Professorship (W3) in “Systems Neuroscience” - Highly attractive research environment at the Multiscale Imaging Center. Apply by January 5th. See shorturl.at/VczFp

IT'S HAPPENING! 💥 I'm psyched to launch the collaboration between @qedscience.bsky.social & @openrxiv.bsky.social @biorxivpreprint.bsky.social! Preprint + q.e.d = your science is out there, and anyone can appreciate it. Let's care about making discoveries, and not on “getting published” (1/3) 👇

Thread coming soon, but be the first to read the latest from @franziau.bsky.social!

You might have noticed lots of activity in the napari project recently! 🚀 We're grateful for a grant from CZI that's keeping us going, but grants don't last forever: we're trying to figure out sustainable long term funding. Read our blog post to find out how you can help:

napari.org/island-dispa...

1/ Hello Drosophila-philists and braino-maniacs! 👋🪰🧠🧪

The Caron lab has a new preprint, and it is about 🥁🥁🥁 democracy!

Neuro-democracy, to be precise. So: drop EVERYTHING and listen up — a 🧶!

www.biorxiv.org/content/10.1...

Catherine Dulac Named Xander University Professor - Harvard University - Department of Molecular & Cellular Biology MCB’s Catherine Dulac, Howard Hughes Medical Institute Investigator and renowned neuroscientist, has been appointed the Xander University Professor. Four Harvard scholars were recognized with appointm...

Catherine Dulac Named Xander University Professor 🧠 🧪🧬 #AcademicSky #higherEd
www.mcb.harvard.edu/department/n... @dulaclab.bsky.social @rachellegaudet.bsky.social @neurovenki.bsky.social @naoshigeuchida.bsky.social @harvardbrainsci.bsky.social @hhmi.org @cryptogenomicon.bsky.social

A depiction of expression patterns of the FOXP1, FOXP2, and FOXP4 genes in the brain, based on the developmental human RNA sequencing dataset of BrainSpan (http://www.brainspan.org/). Data cover different prenatal timepoints starting at 8-to-10 weeks postconception (abbreviated as pcs), postnatal timepoints from 0-to-12 months (abbreviated as mos), and expression measured in adulthood. A dashed vertical line represents time of birth. Individual dots are shown each representing one brain sample, and lines show loess curves fitted through the datapoints. The analyzed brain regions are A1C, primary auditory cortex; CB, cerebellum; CBC, cerebellar cortex; DFC, dorsolateral prefrontal cortex; DTH, dorsal thalamic nucleus; HIP, hippocampus; IPC, inferior parietal cortex; ITC, inferior temporal cortex; M1C, primary motor cortex; MD, mediodorsal thalamic nucleus; MFC, medial frontal cortex; OFC, orbitofrontal; S1C, primary sensory cortex; STR, striatum; TC, superior temporal cortex; V1C, primary visual cortex; VFC, ventromedial prefrontal cortex. This image comes from Figure 1 of a paper entitled “Molecular networks of the FOXP2 transcription factor in the brain” written by den Hoed, Devaraju and Fisher, published in the journal EMBO Reports in August 2021 (Volume 22, article e58203).

More than two decades have passed since we discovered that rare disruptions of the FOXP2 gene disturb development of proficient speech/language skills. Today we know of multiple FOXP genes that are directly implicated in distinct brain-related conditions with differences in symptoms & severity.🧪 1/n

The evolutionary origins of synaptic proteins and their changing roles in different organisms across evolution Nature Reviews Neuroscience - Recent studies have shed further light on the evolutionary origins of chemical synapses, In this Review, Colgren and Burkhardt explore how ancient proteins were...

First neurons didn’t appear overnight. We trace their roots to ancient secretory cells - showing how lifestyle & behavior shaped the evolution of first synapses.🧠🌊 #Evolution #Neuroscience

Our latest in @natrevneuro.nature.com
Link: rdcu.be/eMX3E

@jeffcolgren.bsky.social @msarscentre.bsky.social

Behavioral and circuit principles of temperature gradient navigation Behavioral thermoregulation is critical for survival across animals. Balakrishnan and Haesemeyer discover that thermoregulatory behavior in larval zebrafish is organized into longer-term swim modes. T...

Out now in @currentbiology.bsky.social led by Kaarthik A Balakrishnan: We identify medullary circuits that represent the valence of thermal stimuli and control both long-term strategies of cold-avoidance and short term hot avoidance behaviors to enable thermoregulation. www.cell.com/current-biol...

Perfume scientists tweak cells into having ‘sense of smell’ A study could transform the lab study of olfaction—and may challenge a Nobel-winning hypothesis

www.science.org/content/arti...

Family-based selection: an efficient method for increasing phenotypic variability This article introduces a model comparing various selection regimes for increasing phenotypic variability. Individuals with the same genotype, reared in id

Our new study modeling selection for (behavioral) variability has been covered in a lovely @genetics-gsa.bsky.social podcast featuring first author Shraddha Lall and @ecoevogal.bsky.social

academic.oup.com/g3journal/ad...

A GPCR signaling pathway in insect odor detection Odor detection differs fundamentally in vertebrates, which use G protein-coupled receptors (GPCRs), and insects, which employ ion channels. Here, we report the first evidence for a GPCR defining tunin...

Having personally sworn for years that insects don’t use GPCRs for odour detection, Suguru Takagi (@sugurutakagi.bsky.social) discovers that, in fact, they sometimes do …

www.biorxiv.org/content/10.1...

Mice navigate scent trails using predictive policies Animals actively sense their environment to extract features of interest to guide behaviors. For mammals, odors are prominent environmental features which are sampled by active modulation of sniffing ...

Thrilled to share this work, long time in the making! Carried through creatively by @siddjakes.bsky.social after initial design & piloting by @trackingskills.bsky.social, with help from @trackingactions.bsky.social. Modeling in collaboration with Massimo Vergassola & Nicola Rigolli.

📢We're #hiring Group Leaders!

Apply to lead a lab at Janelia & advance biology using theory, computational modeling & machine learning.

🔹5-year renewable appointment
🔹Pioneer new tools & approaches
🔹Collaborate across disciplines

Apply by Nov. 4👉 https://janelia.link/groupleader

BIG NEWS!! We will be hiring a new professor with 25 years of endowed funding at the @biozentrum.unibas.ch @unibas.ch, focused on using biophysics and structural biology to explore climate-related fundamental science topics. Come start an innovative research cluster with us! 🧪🔬🧶🧬🌾🌍

ALT text: A UMAP representation of a single cell RNAseq dataset from the Drosophila ventral nerve cord as well as images of the Drosophila nerve cord connectome and different stages of fly development.

Neuronal diversity is written in transcriptional codes 🧬. But what is the logic of these codes that define cell types and wiring patterns?
To find out we built a #scRNAseq developmental atlas of the Drosophila nerve cord and linked it to the #connectome 🪰🧠
#preprint thread ⬇️1/8

How is the nervous system organized to coordinate behavior? To approach this massive question, a team led by @asbates.bsky.social, @jasper-tms.bsky.social, @mindyisminsu.bsky.social, & Helen Yang present the BANC: a Brain and Nerve Cord connectome.

Preprint: doi.org/10.1101/2025...

🧪#Neuroskyence

Sensitivity to contamination of food odours depends on hunger and attention Detection of deviant notes in food odours protects against accidental contaminant ingestion, but this risk needs to be weighed against the potential c…

🍲🍲 NEW PAPER 🍰🍰
www.sciencedirect.com/science/arti...
Food choices are always a tradeoff between the benefits of energy intake and the risk of accidental contamination. The relative importance of these two varies depending on a person's current metabolic need. (1/3)

Let's share @etlunsford.bsky.social's work : to survive, animals avoid drifting involuntarily in their environment. While humans rely on visual & vestibular cues, birds & fish need to sense complex flow changes of the external fluid (air/water) around them to select motor actions. How do they do?(1)

How we’re rebuilding the Weizmann Institute — and our hopes for a better future Scientific research is at the heart of Israel’s success and has worldwide benefits. Our work will continue despite adversity.

Scientific research is at the heart of Israel’s success and has worldwide benefits. Our work will continue despite adversity, says Alon Chen

https://go.nature.com/40wXMx6

Escaping groupthink: What animals’ behavioral quirks reveal about the brain Neuroscientists have long ignored the variability in animals’ behavioral responses in favor of studying differences across groups. But work on the brain differences that underlie that variability is…

ICYMI: Neuroscientists long ignored variability in animals’ behavior in favor of studying differences across groups. But now researchers are studying the brain differences that underlie that variability.

By @avaskham.bsky.social

#neuroethology

www.thetransmitter.org/animal-behav...

Four neurons pattern brain-wide developmental activity through neuropeptide signaling. www.biorxiv.org/content/10.1101/2025.06....