Excited to share the #Snakemake monitoring tool I've been working on:
snkmt (Snakemate) - a CLI utility for real-time workflow monitoring. Basically solves the "is my pipeline still running?" problem and makes debugging failed jobs much easier.
#bioinformatics #workflow #opensource 1/3

I wish I could join. Looking forward for the new features.

An exciting first day of the #SnakemakeHackathon2025 at @cern.bsky.social is ending now. I have already merged several pull requests and many very productive teams have formed!

Job opening in my research group!! Please share.

I'm looking for a lab technician to join my small team investigating how chromatin structure regulates gene expression in C. elegans.

www.fmi.ch/education-ca...

Majority of all participants to the hackathon gathered for a photo at the CERN.

#SnakemakeHackathon2025 ! We started!

At the CERN for better #ReproducibleComputing and #ReproducibleResearch .

I wish I could join. I am looking forward for the new features🚀🚀🚀

New paper from my PhD provides genomic evidence that white shark livers are on the menu for Aussie killer whales!

See more here: onlinelibrary.wiley.com/doi/epdf/10....

I agree. UMAP/t-SNE esse delendam. Two quibbles. You present UMAP as a function of the high-dimensional input vectors to the 2D output space, and that the problem is people do not understand what that function is. But it isn't even a function! There's no way to ask: where would this additional 1/n

Biologist, stop putting UMAP plots in papers!

Blogpost here: simplystatistics.org/posts/2024-1...

Our group CBG at ETHZ:

We are excited to share that our new tool VILOCA has been published! VILOCA is a novel method for mutation calling and local haplotype reconstruction from diverse viral short-read and long-read sequencing data. It has already proven to be useful in various settings […]

This one? bsky.app/profile/nano...

A great post on "How to generate SAM/BAM records and files for testing with SamBuilder" written by Alison Meynert. It's part of how we rigorously and programmatically test our #bioinformatics #genomics tools @fulcrumgenomics.bsky.social!

fulcrumgenomics.com/2024-11-test...

The hallmarks of cancer immune evasion Cancer cells often evade the host immune system, challenging the effectiveness of immunotherapy. In this comprehensive review, Galassi et al. summarize key mechanisms of immune evasion within the “thr...

The hallmarks of cancer immune evasion

GENCODE 2025: reference gene annotation for human and mouse Abstract. GENCODE produces comprehensive reference gene annotation for human and mouse. Entering its twentieth year, the project remains highly active as n

GENCODE 2025: reference gene annotation for human and mouse. #Gencode #GeneAnnotations #Genomics #NAR 🧬
academic.oup.com/nar/advance-...

Welcome to #bsky @giorgiocorfu.bsky.social

Gene count estimation with pytximport enables reproducible analysis of bulk RNA sequencing data in Python AbstractSummary. Transcript quantification tools efficiently map bulk RNA sequencing reads to reference transcriptomes. However, their output consists of t

You can now run tximport in Python with pytximport thanks to @compmed.bsky.social et al. academic.oup.com/bioinformati...

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