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Posts by David Balchin

One syllable > three

3 hours ago 0 0 0 0

3. A curiosity/note of caution: just because a chaperone is found at the translating ribosome, that doesn't mean it binds the nascent polypeptide. TRiC returns to the ribosome late in p53 synthesis by hitchhiking on a mature p53 monomer that assembles with the nascent chain.

3 hours ago 2 0 0 0

2. TRiC binding is particularly selective, for two reasons. i. It prefers specific motifs in the NC, which are only sometimes exposed. ii. Once partially folded, the nascent chain "hides" from TRiC by binding the ribosome instead. A good way to keep fragile folding intermediates safe.

3 hours ago 1 0 1 0

A few details for the afficionados:
1. Quantitative MS of nascent chain interactomes showed how chaperones (and other proteins) are allocated to NCs. Hsp70, Hsp90 and TRiC predominate for p53, and they compete rather than follow a hierarchy.

3 hours ago 1 0 1 0

Laura Karpauskaite in my group tackled these questions for p53, the chaperone-addicted tumour-suppressor/transcription factor.
She found that different chaperones constantly compete to bind nascent p53. Small changes in fold can tip the balance, and the ribosome ultimately decides who wins.

3 hours ago 1 0 1 0
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New from our lab @crick.ac.uk.
Nascent proteins emerge from the human ribosome into a cytosol packed with hundreds of different molecular chaperones.
Which chaperones recognise specific nascent chains, and what dictates their binding preferences?
www.biorxiv.org/content/10.6...

3 hours ago 18 4 4 0

UK Proteostasis Meeting 2026- Submit your abstract soon!

Don’t miss the chance to present: most talks will be chosen from submitted abstracts, with poster presenters also invited to give a flash talk. ECRs are especially encouraged to apply.
Deadline: 1 May 2026
Register: forms.gle/dWz2qztKgftB...

6 days ago 3 1 0 0

Postdoc opening with us at EPFL!

Experimental project on how ATP driven chaperone cycles keep proteins out of equilibrium. We will quantify energy use, kinetics, and functional outcomes, including clients whose native-like functional state is stable only by sustained chaperone action.

1 month ago 7 11 2 0
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UK Proteostasis Meeting 2026 – Reminder: Register Today


📅 20–21 July 2026 at The Francis Crick Institute, London

🗓 Abstract deadline: 1 May 2026


💷 Fees: £45 (Student/Postdoc) | £75 (Group Leader)

🔗 Register: forms.gle/dWz2qztKgftB...

🔗 Payment: www.eventbrite.co.uk/e/uk-proteos...

1 month ago 5 5 0 2
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Proteostasis UK Logo Competition

Design our new logo and win registration, UK‑based travel, and accommodation to attend the UK Proteostasis Meeting 2026, 20–21 July at The Francis Crick Institute, London.

See here for more information:
proteostasisuk.co.uk/calls/proteo...
Deadline: 1st May 2026

1 month ago 8 10 0 1

Congratulations Elif!

1 month ago 1 0 0 0

Our recent investigation of the constriction in the bacterial ribosomal tunnel is online. Unbiased all-atom MD simulations of the entire ribosome and PDB analysis show, how flexible the constriction is. The flexibility is modulated by short nascent polypetides.

1 month ago 9 6 0 0
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Ubiquitin & Friends Fiesta in Vienna, 29-30 April 2026.
Great speakers, small size, a friendly community, perfect for early-career researchers to connect with fellow ubiquitin enthusiasts. Sign up at www.protein-degradation.org/symposium/ and submit abstracts for talks and awards.
#ubfriends26

1 month ago 20 15 1 2
Research Group Leader Tenure Track - Structural Studies - LMB 2775 - Medical Research Council Location: Cambridge. Vacancy: Research Group Leader Tenure Track - Structural Studies - LMB 2775. Closing Date: 16/03/2026, 23:55

Please spread the word: the Structural Studies Division @mrclmb.bsky.social is looking for a new tenure-track, independent group leader with an exciting plan in any area of Structural (Molecular & Cell) biology, in discovery biology and/or methods development. 🥳

mrc.tal.net/vx/mobile-0/...

2 months ago 83 106 1 3

Join us at the @crick.ac.uk for the 2026 meeting of the UK proteostasis community!
We especially encourage students and postdocs to attend and share their work. All talks (except the keynotes) will be selected from abstracts.

2 months ago 19 15 0 0

Huge congrats to you and @niko-dalheimer.bsky.social . Great to see this out.

2 months ago 1 0 0 0
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I'm thrilled to share our new publication, with co-first author @ Niko Dalheimer, is now out on Nature. Check out how we use live cell single particle tracking to study real time dynamics between TRiC chaperonin system and it substrates in the crowded cellular environment.

2 months ago 12 4 2 0
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Single-molecule dynamics of the TRiC chaperonin system in vivo - Nature Single-particle tracking experiments in intact cells reveal dynamic co- and post-translational interactions of the TRiC–PFD chaperonin complex with client proteins during in vivo protein folding.

I’m excited to share my first-author paper, with co-first author @rongqinxiaoxiao.bsky.social, now out in @nature.com. We developed a live-cell single-particle tracking platform to see how TRiC & prefoldin engage proteins during co- and post-translational folding. 1/9 www.nature.com/articles/s41...

2 months ago 33 13 1 1
In vivo kinetics of protein degradation by individual proteasomes Protein degradation by the proteasome is central to cellular homeostasis and has been studied extensively using biochemical and structural studies. Despite an in-depth understanding of core proteolytic activity, it has remained largely unresolved how individual proteasomes process substrates inside living cells where many substrate types and co-factors exist. Here, we establish a live-cell single-molecule imaging approach that enables direct visualization and quantification of protein degradation by individual proteasomes. Using this approach, we find that substrate identity, folding and protein-protein interaction have a surprisingly modest impact on processing efficiency, whereas the mode of substrate engagement greatly impacts substrate processing; degradation initiated from protein termini typically proceeds rapidly and with high processivity, whereas internal engagement constitutes a distinct processing mode that exhibits poor processivity and a specific requirement for the AAA+ family ATPase p97/VCP. Furthermore, degradation initiated from opposite termini proceeds with asymmetric rates in a sequence-dependent manner, demonstrating that directionality is an important feature of proteasomal processing in vivo. Notably, poly-glutamine substrates associated with neurodegenerative disease are efficiently degraded from one terminus but resist degradation when engaged from the opposite terminus, highlighting the importance of substrate engagement mode. Together, our results show that different modes of substrate engagement lead to different proteasomal processing outcomes in vivo and revise the prevailing view of the proteasome as a uniform degradation machine. ### Competing Interest Statement The authors have declared no competing interest.

New lab paper!! We develop a technology for real-time, single-molecule visualization of proteasomal substrate degradation in cells. We find that the site of substrate engagement by the proteasome determines decay kinetics, efficiency and co-factor requirement.

www.biorxiv.org/content/10.6...

3 months ago 47 15 1 2

Thanks to the reviewers, and editor @kristabledsoe.bsky.social, for a smooth and constructive process, great collaborators from the Bukau and Enchev labs, and the fantastic joint lead authors @aroesel.bsky.social and @santosh-s.bsky.social

3 months ago 2 0 0 0
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The ribosome synchronizes folding and assembly to promote oligomeric protein biogenesis Large oligomeric proteins constitute a major fraction of proteomes, but are difficult to refold in vitro, raising the question of how cells direct their biogenesis. Roeselová and Shivakumaraswamy et a...

Our latest cotranslational folding story is now published @cp-molcell.bsky.social. Really cool (I think) new ideas about how exactly the ribosome directs folding and assembly to make sure complicated proteins mature efficiently in cells.
www.cell.com/molecular-ce...

3 months ago 43 23 2 0
Client Challenge

For the equivalent human complexes, see our recent paper: www.nature.com/articles/s41...

3 months ago 2 1 0 0
Client Challenge

If anyone is interested in making bacterial ribosome-nascent chain complexes and studying them using HDX-MS, we have written up a detailed protocol.
rdcu.be/eYFx4
Characterise the conformational dynamics of the ribosome, nascent polypeptide and bound chaperones, label-free and at peptide-level

3 months ago 10 8 1 0
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Join us for the #Ubiquitin & Friends Symposium 2026, April 29-30, in Vienna!
Fantastic guest speakers👇 & many slots for talks from abstracts, flash-talks & posters. Lots of opportunities to network. Register now to save your spot!
➡️ www.protein-degradation.org/symposium/
#ubfriends2026

3 months ago 34 21 1 3
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Evolution of the ribosomal exit tunnel through the eyes of the nascent chain The ribosomal exit tunnel is a universally conserved feature of the large subunit that directs the nascent polypeptide chain into the cellular environment and is involved in co-translational folding, ...

Just in time for 2026! 🎆 Presenting a nascent-centric view on the shape of the ribosomal exit tunnel topology, based on MD-derived occupancy maps for 55 distinct ribosomes. 🧶🧬🖥️
📄 Read the preprint: biorxiv.org/content/10.6...

#StructuralBiology #Ribosome #CryoEM #Evolution #Biophysics

3 months ago 19 10 0 1

Thanks Paolo!

5 months ago 2 0 0 0

Thanks to @chercheurjuteux.com and the other reviewers - all fair and constructive.

5 months ago 1 0 1 0
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GroEL/ES chaperonin unfolds then encapsulates a nascent protein on the ribosome - Nature Communications The GroEL/ES chaperonin can act during protein synthesis to promote folding. Here, Roeselová et al. show how GroEL captures, remodels and sequesters nascent proteins in its central chamber, while they...

Our story on GroEL/ES action during cotranslational folding is now published @natcomms.nature.com. Led by former-student Alzbeta Roeselova, and in collaboration with Rado Enchev's lab @crick.ac.uk.
www.nature.com/articles/s41...

5 months ago 27 10 1 0
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Postdoc (m/f/x) Our Research Group led by Janine Kirstein, Professorin at Friedrich-Schiller-University Jena, is looking for a highly motivated and talented Postdoctoral Researcher (m/f/x) to join a research project ...

Postdoc position available in my lab in Jena (Germany.
jobs.leibniz-fli.de/jobposting/6...
If you're interested in protein biochemistry of amyloid proteins and chaperones, this job may be for you. B2 Level German is required as the candidate will be involved in teaching in German.

5 months ago 5 4 0 0
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Crick group leaders work across disciplines, supported by core funding and mentoring to build ambitious, curiosity-driven research.

Apply now to join us ➡️ www.crick.ac.uk/careers-stud...

5 months ago 24 14 0 3