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Posts by Jan H. Jensen

Another big issue is whether g-xTB offers advantages over UMA

4 hours ago 2 0 0 0

We're also going to test it for most of our projects, but we do need stable gradients with continuum solvation for some of the things we do. As far as I know, that's not quite there yet

6 hours ago 1 0 1 0
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GitHub - grimme-lab/g-xtb: Development versions of the g-xTB method. Final implementation will not happen here but in tblite (https://github.com/tblite/tblite). Development versions of the g-xTB method. Final implementation will not happen here but in tblite (https://github.com/tblite/tblite). - grimme-lab/g-xtb

Exciting progress on the new extended tight binding method g-xTB by Stefan Grimme, Thomas Froitzheim and colleagues (github.com/grimme-lab/g...)!

g-xTB can be used within ORCA by using the new binaries either via ExtOpt or directly via ORCA's xtb interface.

#ORCA #gxTB #CompChem #QuantumChem

9 hours ago 9 2 0 0
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GitHub - grimme-lab/g-xtb: Development versions of the g-xTB method. Final implementation will not happen here but in tblite (https://github.com/tblite/tblite). | Thomas Froitzheim I am very happy to share that we have just released a new and improved version of our g-xTB model — now finally with fully analytic gradients! It took another nine months after the first g-xTB releas...

G-xTB with gradients is now out! #compchem
www.linkedin.com/posts/thomas...

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The Syntax of Matter: Synthesis Planning as the Foundation of Generative Chemistry | ChemRxiv Recent advances in deep learning have improved benchmark performance for chemical property prediction, yet reliable transfer to new chemical domains remains limited. A contributing factor is that many models treat molecules primarily as static graphs, ...

The Syntax of Matter: Synthesis Planning as the Foundation of Generative Chemistry | ChemRxiv chemrxiv.org/doi/full/10.... #compchem

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Benchmarking physics-inspired machine learning models for transition metal complexes with diverse charge and spin states | ChemRxiv Physics-inspired machine learning (ML) models can be categorized into two classes: those relying solely on three-dimensional structure and those incorporating electronic information. In this work, we benchmark both classes for predicting quantum-chemical ...

Benchmarking physics-inspired machine learning models for transition metal complexes with diverse charge and spin states | ChemRxiv chemrxiv.org/doi/full/10.... #compchem

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moTSart: Accelerating Automated Transition State Search with Generative Models in a Low-Data Regime | ChemRxiv Transition states (TSs) are first-order saddle points on the potential energy surface, and thus the highestenergy structure on the (multi-step) minimum-energy reaction pathway that corresponds to a chemical reaction, determining the rate at which it ...

moTSart: Accelerating Automated Transition State Search with Generative Models in a Low-Data Regime | ChemRxiv #compchem chemrxiv.org/doi/full/10....

3 days ago 2 0 0 0
Curated digital datasets of acid dissociation constants in dipolar aprotic solvents | ChemRxiv The acid dissociation constant is a key thermodynamic property, but large compilations of highly trustworthy data in non-aqueous solvents are scarce. This work presents a newly-digitized compilation, with corrections, of pK a data published originally by ...

Curated digital datasets of acid dissociation constants in dipolar aprotic solvents | ChemRxiv #compchem chemrxiv.org/doi/full/10....

3 days ago 7 3 0 0
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What is the "‡" symbol meaning in a reaction mechanism? I was studying hydroboration from Clayden's Organic Chemistry [1, p. 1281] and the transition state had “‡” symbol in the upper right corner of the activated complex: We know that this is not the...

chemistry.stackexchange.com/questions/13... #compchem

6 days ago 4 0 1 1
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Inverse Design of Inorganic Compounds with Generative AI Machine learning is revolutionizing chemistry. Beyond the value of predictive models accelerating virtual screening, generative AI aims at enabling inverse design, reversing the compound-to-property p...

Inverse Design of Inorganic Compounds with Generative AI
arxiv.org/abs/2604.11827 #compchem

1 week ago 2 0 0 0
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Do humans and large language models agree on the quality of synthesis plans? | ChemRxiv Large language models (LLMs) have seen a widespread adoption in all spheres of science including chemistry and cheminformatics. Nevertheless, our knowledge of how they operate is limited, giving rise to exploration of their capabilities in different areas ...

🧪 Can LLMs judge chemical synthesis plans?

Excited to share new work from our industrial postdoc Varvara Voinarovska, in collaboration with Samuel Genheden and Mikhail Kabeshov at AstraZeneca's Molecular AI team!

📄 : doi.org/10.26434/che...

1 week ago 13 3 2 0

who knew?

oh right we all knew

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Right into the Saddle: Stereochemistry-Aware Generation of Molecular Transition States | ChemRxiv Determination of transition state structures is fundamental to the mechanistic understanding of chemical reactivity and selectivity, yet conventional approaches require extensive expert intervention for geometry preparation and saddle-point optimization, ...

Link to the paper's not working for me: doi.org/10.26434/che...

2 weeks ago 2 0 0 0
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Glad to share our new work: RitS (Right into the Saddle): a generative model for direct transition state (TS) prediction.
📄 Paper: chemrxiv.org/doi/full/10.26…
🤠 Code: github.com/isayevlab/RitS
• Flow-matching model with explicit stereochemistry control
• Direct TS generation from SMILEs #compchem

2 weeks ago 31 9 2 2
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isayevlab (Isayev Lab at CMU) AI4Science and Science4AI

🚨 AIMNet2 MLIP models are now available on @huggingface 😊 Check it out: huggingface.co/isayevlab and updated documentation: isayevlab.github.io/aimnetcentral/… #compchem #compchemsky #chemsky

2 weeks ago 13 4 0 0
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Avogadro 2.0.0 released Avogadro is a free and open source molecular editor and visualization tool. The new release of Avogadro 2, is a major update, and includes major changes, a revised interface, and...

Avogadro 2.0.0 released

Avogadro is a free and open source molecular editor and visualization tool. The new release of Avogadro 2, is a major update, and includes major changes, a revised interface,...

2 weeks ago 3 1 0 0
We Need To Talk About AI...
We Need To Talk About AI... YouTube video by Cool Worlds Podcast

We Need To Talk About AI...
youtu.be/PctlBxRh0p4?...

2 weeks ago 1 0 0 0
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Vibe physics: The AI grad student Anthropic is an AI safety and research company that's working to build reliable, interpretable, and steerable AI systems.

Vibe physics: The AI grad student
www.anthropic.com/research/vib...

2 weeks ago 1 0 0 0

A timely and eloquent essay, well worth reading by anyone in science.

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If you've got something really big - 100,000 atoms, a million atoms? I'd really like to try it out.

2 weeks ago 18 5 2 0
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A Priori Sampling of Transition States with Guided Diffusion Transition states, the first-order saddle points on the potential energy surfaces, govern the kinetics and mechanisms of chemical reactions and conformational changes. Locating them is challenging bec...

A Priori Sampling of Transition States with Guided Diffusion
arxiv.org/abs/2603.25980 #compchem

3 weeks ago 4 0 0 0
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Release 2026_03_1 (Q1 2026) Release · rdkit/rdkit Release_2026.03.1 (Changes relative to Release_2025.09.1) Acknowledgements (Note: I'm no longer attempting to manually curate names. If you would like to see your contribution acknowledged with you...

We did a new major #RDKit release yesterday. v2026.03.1 is out and the conda-forge builds are available.

As always, especially with major releases, be sure to read the "Backwards incompatible changes" section of the release notes!

github.com/rdkit/rdkit/...

3 weeks ago 19 5 1 0
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15th RDKit UGM 2026 2026 RDKit User Group Meeting (in person and online)

Free registration for the 2026 #RDKit UGM (both in-person and online attendance) is now open:
www.eventbrite.com/e/1985889262...

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Exploring Reaction Condition Space with Expert-Informed Representation Learning | ChemRxiv The selection of appropriate reaction conditions is paramount in chemical synthesis and can greatly impact the success of experimental campaigns. Machine learning models for reaction outcome prediction have focused primarily on reactant representations, ...

Exploring Reaction Condition Space with Expert-Informed Representation Learning | ChemRxiv #compchem chemrxiv.org/doi/full/10....

3 weeks ago 2 0 0 0
Density Functional Theory Surrogate Enables Fast and Broad Computational Evaluation of Homogeneous Transition Metal Catalytic Energy Landscapes | ChemRxiv The recently disclosed machine learning interatomic potential (MLIP) universal models for atoms (UMA) can be used to evaluate the energy and structures of transition metal catalyzed reactions. UMA, due to extensive training, has the potential to act as an ...

Density Functional Theory Surrogate Enables Fast and Broad Computational Evaluation of Homogeneous Transition Metal Catalytic Energy Landscapes | ChemRxiv #compchem chemrxiv.org/doi/full/10....

4 weeks ago 2 0 0 0
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Stochastic tensor contraction for quantum chemistry Jiace Suna and Garnet Kin-Lic Chan (2026) Highlighted by Jan Jensen What this paper lacks in terms of punchy title, it makes up for in conte...

New highlight: Stochastic tensor contraction for quantum chemistry
(Monte Carlo Meets Coupled Cluster: Slashing the Cost of CCSD(T)) www.compchemhighlights.org/2026/03/stoc... #compchem

4 weeks ago 7 1 1 0
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Machine-Learned Leftmost Hessian Eigenvectors for Robust Transition State Finding The reliable determination of transition states (TSs) benefits from second-order information for robust convergence and validation, but the computational expense of Hessians prohibits their routine us...

Machine-Learned Leftmost Hessian Eigenvectors for Robust Transition State Finding
arxiv.org/abs/2603.21323 #compchem

4 weeks ago 3 0 0 0
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AI-Predicting Compound Affinity. We Aren't There Yet.

The latest AI/ML tools for co-folding proteins around small molecule ligands can produce impressive results.

Until you start looking at them closely.

4 weeks ago 79 24 0 6
Taming T-REX: A Canonical Language for Geometry-Aware Generative Design of Transition-Metal Complexes | ChemRxiv Canonical string representations have transformed organic cheminformatics, yet transition-metal complexes (TMCs) lack an equivalent that captures coordination geometry, stereochemistry, and donor topology. We introduce Trans-pair Relations EXpression (T-...

Taming T-REX: A Canonical Language for Geometry-Aware Generative Design of Transition-Metal Complexes | ChemRxiv chemrxiv.org/doi/full/10.... #compchem

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New preprint: Why some active-learning screens succeed and others fail: identifying active clusters using decision trees doi.org/10.26434/che... #compchem

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