Polyphosphate acts as an architectural regulator of carbon fixation and nucleoid structure in cyanobacteria www.biorxiv.org/content/10.6... #jcampubs
Posts by Ran Duan
The maturation of the unique FeMo-cofactor of molybdenum nitrogenase is a multistep process requiring the sequential action of a series of maturase complexes. Cryo-EM structures capture trafficking of a key intermediate of cofactor assembly
www.nature.com/articles/s41...
Want to convert old relative abundance ocean amplicon data into absolute abundances? Williams et al. show a flow cytometry "anchor" can provide reasonable absolute abundances, validated by internal-standard corrected metagenomics with single copy genes, and amplicons academic.oup.com/ismecommun/a...
January and July maps of estimated proline, glutamic acid, ectoine, and DHPS excretion in the top 100 m seawater of the global ocean. Labels indicate producers for which the metabolite is among the top 10 exometabolites. Surveyed phytoplankton and their functional group are indicated by color.
One of the most-viewed PNAS articles in the last week is “Characterization of phytoplankton-excreted metabolites mediating carbon flux through the surface ocean.” Explore the article here: https://ow.ly/zPNG50YBfRR
For more trending articles, visit https://ow.ly/iZnr50YBfRS
Biochemical remodelling of phytoplankton cell composition under climate change www.nature.com/articles/s41... #jcampubs 🌊
Alkaline phosphatase activity supports heterotrophic carbon acquisition in a coastal time series site and a representative marine bacterium www.biorxiv.org/content/10.6... #jcampubs 🌊
In a new Nature study, we show that extreme global climate outcomes may occur even under moderate 2°C warming for several sectors.
The findings reinforce the urgency of limiting warming well below 2°C.
Together with @erichfischer.bsky.social @janasillmann.bsky.social @zscheischlerjak.bsky.social
Statistical Rethinking 2026 is done: 20 new lectures emphasizing logical and critical statistical workflow, from basics of probability theory to causal inference to reliable computation to sensitivity. It's all free, made just for you. Lecture list and links: github.com/rmcelreath/s...
New Perspective form Rory Maizels & me: "Gene regulatory networks: from correlative models to causal explanations"
Gene regulatory networks are supposed to give us mechanistic explanations of development, so why are we drowning in 'hairballs' of statistical correlations?
rdcu.be/e7zx7
Artist’s illustration of a pristine pyrite grain as an archive of Earth's 3.5-billion-year transition to an oxygenated atmosphere, showing machine learning “threads” extracting redox patterns from the mineral’s lattice and the reconstructed pulses of atmospheric oxygen. CREDIT: Zhen-Jie Zhang.
Trace elements incorporated into grains of pyrite preserve information about the chemistry of ancient oceans, allowing researchers to reconstruct the interplay of biology and tectonics driving long-term oxygen fluctuations. In PNAS: https://ow.ly/RJSO50YwsLC
Experimental evolution of fission yeast in the same environment as a previous experiment with budding yeast reveals parallel evolution but distinct molecular mechanisms and targets of adaptation in the two species 🧪 www.nature.com/articles/s41...
AlphaFold database has entered the era of complexes. Together with NVIDIA, DeepMind and EBI, we use ColabFold, OpenFold and MMseqs2-GPU to predict ~31 million complexes (homo & hetro-dimers) resulting in 1.8 million high-quality predictions
📄 research.nvidia.com/labs/dbr/ass...
🌐 alphafold.ebi.ac.uk
🚨 Next Friday 20/03 15:30 EU, Julia Schwartzman (University of Southern California) will present the talk
Ecological Dynamics of Bacterial Groups
at the Population Dynamics Seminars.
Subscription sites.google.com/view/popdyn/
This could be your dream job!
PhD in ecology, and English and Japanese language skills required... working for POKEMON!!!
www.ign.com/articles/the...
International Women’s Day celebrates the Earth’s 4 billion female inhabitants. Nature brings you a collection of the latest on advancements in women’s health and career guidance, advice and inspiration for women in science. 🧪 #IWD2026
The image shows two figures, a and b. Figure a shows a map of Europe with thermal positions indicated by color-coded hexagons, ranging from -1.0 to 1.0. Arrows point to "Reduced negative impacts" and "Increased negative impacts." Figure b shows a scatter plot of effect size vs thermal position with a fish illustration on top. "Biomass change estimates" indicated by circle size.
A study published in Nature Ecology & Evolution reports that long-term ocean warming reduces global fish biomass by up to 19.8% annually. Warmer years and marine heatwaves were linked to sharp biomass losses of up to 43.4%. go.nature.com/40b6AIB 🧪 🌍
Check out our new review in Nature Reviews Genetics on de novo emerged genes and proteins. How they emerge, are lost and persist - and how de novo emerged proteins relate to randomized proteins! @bornberglab.bsky.social www.nature.com/articles/s41...
Ocean warming enhances iron use efficiencies of marine ammonia-oxidizing archaea #USC_MEB www.pnas.org/doi/abs/10.1... #jcampubs
DECODE: deep learning-based common deconvolution framework for various omics data www.nature.com/articles/s41... #jcampubs
Happy 30th birthday, Pokémon! Since 1996, the Japanese media sensation has inspired generations of researchers in fields as diverse as evolution, biodiversity and research integrity. go.nature.com/4bcjZ9w
We have a new study out! In this work, we examine how the Gulf Stream and Kuroshio-Oyashio Extension co-vary, and this is tied to atmospheric variability and potentially sea-ice anomalies. However, this linkage may be changing in a warming world...
➡️ #OpenAccess: www.science.org/doi/10.1126/...
Calling all researchers working on *Genomics of Adaptation to Extreme Thermal Environments*
I'm serving as a guest editor of an upcoming collection in BMC Genomics and am eager to read your submission! More on scope and how to contribute here: bit.ly/4kH3PIx 🧪 @springer.springernature.com
Decoupled timescales of organic carbon and phosphorus recycling in the global ocean www.pnas.org/doi/abs/10.1... #jcampubs 🌊
New paper from my team detailing a greatly expanded genomic database of Asgard archaea revealing of high energy metabolism those related to eukaryotes! Led by @katyappler.bsky.social lots of help from @jameslingford.bsky.social @valdeanda.bsky.social @kassipan.bsky.social doi.org/10.1038/s415...
How could a simple self-replicating system emerge at the origins of life? RNA polymerase ribozymes can replicate RNA, but existing ones are so large that their self-replication seems impossible. Could they be smaller?
Excited to share our latest work in @science.org on a new small polymerase.
1/n
🔥Hot off the press!
❓ How do bacteria get iron when nutrients are scarce and constantly washed away❓
A PriME collective effort reveals—using a new continuous culture device—how bacteria acquire iron under rapid nutrient renewal, beyond #siderophores.
www.pnas.org/doi/10.1073/...
Here, the authors compile transcriptomic data from experimental evolution of a prokaryotic and five eukaryotic species in 22 environments to reveal that gene expression evolution is often repeatable and deterministic.
www.nature.com/articles/s41...
Nutrient availability modulates impacts of short‐term shifts in temperature and grazing on phytoplankton composition and size structure aslopubs.onlinelibrary.wiley.com/doi/10.1002/... #jcampubs 🌊
Proteomic and biogeochemical perspectives on cyanobacteria nutrient acquisition – Part 2: quantitative contributions of cyanobacterial alkaline phosphatases to bulk enzymatic rates in the subtropical North Atlantic bg.copernicus.org/articles/23/... #jcampubs 🌊