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Posts by Netherlands Cancer Institute

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Out today in Journal of the National Cancer Institute Jonathan Spoor and colleagues show that women who have had a breast reconstruction with silicone implants as part of breast cancer treatment do not face an increased risk of developing autoimmune or rheumatic diseases
🔗 doi.org/10.1093/jnci...

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The largest published prospective evaluation of off-label targeted cancer therapies is out today in Nature. Results from the Dutch multicenter DRUP trial show both the potential of this approach and the need for systematic evaluation in clinical trial settings ➡️ www.nature.com/articles/s41...

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Cohesin-mediated loop extrusion and enhancer-associated factors additively contribute to Sox2 looping with its distal enhancer A biweekly scientific journal publishing high-quality research in molecular biology and genetics, cancer biology, biochemistry, and related fields

New paper in Genes & Dev: we dissected how Sox2 — a key pluripotency TF — is regulated by a distal enhancer cluster (SCR) 100 kb away. The results challenge simple models of cohesin-mediated loop extrusion of gene regulation. genesdev.cshlp.org/content/earl... 🧵

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56 grants for the Open Competition Domain Science-XS package 26-1 | NWO The topics of the awarded proposals range from identifying the cause of synaptic dysfunction involved in neurological conditions such as Alzheimer’s disease, or exploring Nanopore sequencing of patien...

Congrats to Stefano Trebeschi on receiving an NWO Science-XS grant. His project develops symmetry-based AI to detect bone metastases on scans, with the potential to improve treatment evaluation and patient care. More:

🔗 www.nwo.nl/en/news/56-g...

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Innovators in Science Award: 2026 Grand Prize Winner Myriam Chalabi
Innovators in Science Award: 2026 Grand Prize Winner Myriam Chalabi YouTube video by Takeda

We’re proud to share that our colleague @myriamchalabi.bsky.social has won the Grand Prize of the 2026 Takeda Innovators in Science Award 🏆

Her bold research in neoadjuvant immunotherapy is reshaping treatment.

Congratulations Myriam!

🎥 Watch the video here: www.youtube.com/watch?v=ch_Z...

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Time to stretch our legs and enjoy the beautiful tulip fields surrounding the venue 🌷

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Of course there is also time for food and enjoying the nice Dutch spring sun ☀️

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Our junior PI's are presenting their new work and collaboration options for future studies

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Today we are at the 2-day NKI retreat full of inspiration and connection

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Macrophages play a dubious role in our body. PhD candidate Daniel Taranto found a way to prevent them from helping liver tumor cells grow in the lab. He’s still happy that his PI convinced him to persevere on his journey towards a PhD ➡️ www.nki.nl/news-events/...

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@nunopadrao.bsky.social

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@tinekelenstra.bsky.social

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As of April 1st, our group leader Tineke Lenstra has been appointed professor by special appointment of Single cell transcription dynamics.

🎉 Congratulations Tineke Lenstra & team! We look forward to what lies ahead.

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A discovery by PhD candidate Nuno Padrão forms the basis of a clinical trial for breast cancer patients initiating this year. It involves stress hormones. They trick your body into believing it’s in a caloric deficit. This is easier to sustain than fasting ➡️ www.nki.nl/news-events/...

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While he was trying to solve a scientific mystery, PhD candidate Nicolaas Boon discovered the mechanism that explains how an important protein is involved in the response to chemotherapy ➡️ www.nki.nl/news-events/...

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New preprint from our lab... We applied our hopping technology to relocate CTCF binding sites to thousands of alternative positions in the Sox2 locus: www.biorxiv.org/content/10.6...

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A cohort of 60 mouse-intraductal patient-derived xenograft models of primary invasive breast cancer was developed to develop neoadjuvant treatments @josjonkers.bsky.social @nkinl.bsky.social
www.science.org/doi/10.1126/...

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How do hormones and diet influence the outcome of #cancer therapy?

Wilbert Zwart (@zwartlab.bsky.social) of the @nkinl.bsky.social gave an amazing lecture on this topic at #KNCVMCCB2026 covering various strategies to use this information for improved treatments.

www.nature.com/articles/s41...

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A dual role for CTCF in development CTCF is an essential DNA binding protein whose absence leads to embryonic lethality. CTCF is primarily known for its role in 3D genome organization where its N-terminal domain interacts with cohesin to anchor chromatin loops. How CTCF facilitates proper embryonic development remains unclear, necessitating temporal control to resolve its stage-specific functions. By combining gastruloids, an in vitro model of embryonic development, with a degron system to rapidly deplete CTCF at defined timepoints, we show that early CTCF depletion impairs early gastruloid morphogenesis. Surprisingly, ATAC-seq and time-resolved RNA-seq revealed that differentiation was unaffected. CTCF binding is strongly enriched at promoters of downregulated genes. Re-expression of a CTCF variant with an N-terminal truncation, incapable of looping, was sufficient to rescue the expression of CTCF-promoter bound genes and the defects in morphogenesis. However, extended culture (up to 168 hours) of gastruloids reconstituted with N-terminal truncated CTCF led to their collapse. Our work shows that CTCF has a dual function in early mammalian development: at early stages CTCF regulates developmentally important genes through promoter binding, while at later stages its looping function is required for correct development. ### Competing Interest Statement The authors have declared no competing interest. European Research Council, https://ror.org/0472cxd90, 637587, 865459 Dutch Research Council, https://ror.org/04jsz6e67, 016.161.316, VI.C.222.049 Dutch Cancer Society, https://ror.org/0368jnd28, N/A

🧵 CTCF is essential for embryonic development, but why has remained unclear. By combining gastruloids with a temporal degron system, we uncovered a surprising dual function — and it changes how we think about CTCF's role in development. 1/8 www.biorxiv.org/content/10.6...

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Ever wondered how a eukaryotic transcription factor finds its specific DNA motif in the vast genome? In this preprint, we directly measured the dynamics of this search process in living cells, revealing a cooperative mechanism mediated by disordered regions. 1/10 doi.org/10.64898/202...

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Clinical development of cancer vaccines - Nature Medicine This Review highlights insights from recent clinical trials and discusses critical factors for optimizing cancer vaccines, with a focus on proxies for vaccine efficacy, neoantigen selection, modular p...

Now in @natmed.nature.com a review on the clinical development of cancer vaccines. It outlines how advances in antigen discovery, vaccine platforms, and combination strategies are shaping the next generation of cancer vaccines and where the field may be heading 🔗 www.nature.com/articles/s41...

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New #EuropeanFairPricingNetwork research shows that some hospitals pay more than double for the exact same cancer drug.

Confidential price negotiations are leaving hospitals in the dark, weaking their bargaining power and deepening inequalities across the EU ➡️ www.nki.nl/news-events/...

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Illuminating cancer’s hidden layer | Netherlands Cancer Institute Over the past decades, cancer research has mapped genomes in extraordinary detail. But DNA is only the blueprint. Ultimately, it’s the proteins that shape tumor behavior, and growing evidence suggests that our current methods don’t capture all proteins.

Read more: www.nki.nl/news-events/...

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We’re excited to reveal that team ILLUMINE led by Reuven Agami has been selected by Cancer Grand Challenges to to take on one of cancer’s toughest challenges. Congratulations to Reuven and all the #CancerGrandChallenges teams! ➡️nki.nl/news-events/news/illuminating-cancer-s-hidden-layer/

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INDIBLADE (phase II): testing the concept of organ preservation enabled by powerful induction therapy in muscle-invasive bladder cancer. High 2-year bladder-intact event-free survival with induction immunotherapy + CRT. Now in Nature Medicine: www.nature.com/articles/s41...

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🎉 Congratulations to @zwartlab.bsky.social on receiving a Vici grant from NWO Dutch Research Council for PERSEUS.
Exploring how gene regulation rewires prostate cancer and how to turn those insights into targeted therapies.

www.nwo.nl/en/news/39-r...

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We;re hiring Junior Group Leaders! 🔬✨
We’re looking for researchers in immunology, chemical biology, AI in biology, or protein design to launch their own independent groups in our collaborative, international environment.

www.nki.nl/news-events/...

2 months ago 18 29 0 2

We are part of @eu-life.bsky.social together with research institutes across Europe we want to strengthen research & innovation and be a voice for research in European policy
This series highlights our shared priorities. This time #Internationality🌍 Stay tuned for the NKI’s story #WeAreEULife

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Computational Postdoc | Netherlands Cancer Institute Computational Postdoc Voest Lab (fully funded) — Spatial Decoding of Unconventional Antitumor Immunity in Colorectal Cancer

Postdoc alert in spatial biology!

Building upon our previous work with MSI cancers (e.g. de Vries et al, Nature, 2023), the Voest Group at the NKI is hiring a (fully funded) postdoctoral fellow with strong expertise in spatial cancer biology.

Learn more / apply here: www.nki.nl/careers-stud...

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DEprot: a comprehensive R-package for the analysis of label-free quantitation mass spectrometry data Abstract. In recent years, studies investigating protein–protein interactions on a proteome-wide scale have increased exponentially. These developments wer

💡“DEprot” is now out on @narjournal.bsky.social Genomics and Bioinformatics.
With Nils Eickhoff ( @zwartlab.bsky.social, @nkinl.bsky.social & @oncodeinstitute.bsky.social), we designed this “all-in-one” tool to facilitate the analyses of LFQ-based proteomics data.

academic.oup.com/nargab/artic...

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