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Posts by Andrea Luppi

12/ Synergistic effort 🙏

Huge thanks to my co-authors @jordytasserie.bsky.social, Lynn Uhrig, & the incredible teams across 3 continents! 🇬🇧🇫🇷🇮🇹🇩🇪🇯🇵🇺🇸🇨🇦
@frosas.bsky.social Pedro Mediano, @parkersingleton.bsky.social, @zhenqi.bsky.social,
@bechir-jarraya.bsky.social @gozziale.bsky.social

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11/ Summing Up

We identified evolutionarily conserved principles of mammalian 🧠 architecture

Neural information integration is governed by a specific synergy between connectomics and transcriptomics, with PVALB inhibitory gradients and central-thalamic switch acting as key gatekeepers 🤝

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10/ Working Model of Thalamic Restoration

Species-specific biophysical modelling of macaque 🧠 successfully recapitulates restoration of integration (ΦR) by central but not ventral thalamus DBS: connectivity profile is key!

Next: model-based virtual clinical trial in disorder of consciousness?

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9/ Inhibition Controls Controllability

Species-specific models with heterogeneous inhibition also show that PVALB is anatomically well-suited to tune 🧠 controllability

Consciousness may rely on conserved interplay between the brain's wiring diagram and its molecular tuning🧬

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8/ Biophysical Modelling

To go beyond correlation, we built computational models 💻🔬 integrating species-specific anatomical wiring with 🧬 gradients for humans, macaques, & mice

Only models with PVALB-driven inhibition successfully recapitulate breakdown of ΦR/integration

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7/ PVALB Inhibition?

We mapped the regional breakdown of ΦR against species-specific gene expression 🧬 in 3 species 👱🐒🐭

Spatial topography of ΦR breakdown coincides with PVALB gene expression (parvalbumin interneurons).

This suggests a role for PV-mediated inhibition in governing integration

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6/ Out of Control

As the system disintegrates, the brain's dynamics become significantly harder to "control" in a network-theoretic sense 🌀

Loss of controllability scales with breakdown of integration (& is restored by CT-DBS)

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5/ Tracking Behaviour

Dominance Analysis shows that ΦR outperforms traditional Φ and other proposed information-theoretic measures of "integration" 📊⚖️ for tracking DBS-induced changes in behavioural arousal

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4/ Reversing the Collapse via Thalamus⚡️🧠

When macaque🐒 is re-awakened by deep-brain stimulation of central thalamus (CT), we also re-ignite ΦR & the brain’s integrative capacity 🔥

Not so for DBS of a control site!

CT is a local switch for the global informational architecture

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3/ Convergent Breakdown

The results were striking: across 4 mammalian species 👱🐒🐵🐭 and 6 molecularly diverse drugs, anaesthetic-induced disconnection from environment is marked by a convergent collapse of ΦR 📉 (but *not* traditional Φ or related measures) - rising again upon recovery 📈

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2/ From Φ to ΦR 🔥

How do you measure "integration"? Information decomposition reveals that influential measures of "whole-minus-sum-of-parts" double-count the redundancy in the parts.

Our revised Φ (ΦR) is a principled solution📊⚖️

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1/ The Big Picture

We combined fMRI, information theory, & species-specific computational modelling in human, macaque, marmoset and mouse 👱🐒🐵🐭 to ask: does anaesthesia reduce the 🧠's capacity to be "more than the sum of its parts"?

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Convergent transcriptomic and connectomic controllers of information integration and its anaesthetic breakdown across mammalian brains - Nature Human Behaviour Luppi et al. identify transcriptomic and connectomic controllers of information integration and its breakdown induced by anaesthesia in humans, macaques, marmosets and mice.

The Mammalian Architecture of Information Integration🧠🧬

For #BrainAwarenessWeek, excited to share our latest work about #Neuroscience of #Consciousness in @nathumbehav.nature.com

www.nature.com/articles/s41... 🧵👇

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11/ Thanks 🙏

Extremely grateful to Hana & also Yoni Sanz Perl, Jakub Vohryzek, @frosas.bsky.social @gozziale.bsky.social, @misicbata.bsky.social, Morten Kringelbach, Gustavo Deco & all other co-authors, for making this team effort possible!

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10/ Open code!

Check out our code for the cooperative-cpmpetitive Hopf model, courtesy of the amazing Hana Ali

👉 github.com/Hana-Ali/com...

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9/ Outlook 🔭

Competitive interactions are 🗝️ for realistic computational models

Macroscale competition may be a conserved principle of mammalian 🧠 organization

Implications for more personalised digital twins in medicine ♊️, & designing biologically inspired AI systems

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8/ Computational consequences

Competitive interactions improve computational capacity, when the model’s generative connectivity is used as the wiring diagram for a connectome-based reservoir network 🤖

Could competition lie behind the efficiency of mammalian👱🐒🐭 brains? 🤔

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7/ Not just "more parameters"...

Allowing negative connections provides greater performance gains than doubling (!) the number of model parameters.

Want more? Check out our Supplementary for extensive validations & more sanity checks

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6/ Consistent network topology of competition

Competitive connections are not randomly distributed.
In each species🐒🐭, negative connections tend to be longer-range than positive ones, and less modular & locally clustered

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5/ Biological annotations

Across species 🐭🐒, competitive interactions are grounded in 🧠 biology

They link regions at opposite ends of the cortical hierarchy, with opposite molecular 🧬 and cytoarchitectonic profiles.

Competition may help segregate functionally diverse systems

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4/ Dynamical consequences

It is not just FC that improves, either. After all, that was the model objective.

But by allowing competitive interactions, we also get more realistic 🧠 dynamics : synergy, local-global broadcasting, metastability, and irreversibility. For free!

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3/ From distant cousins to digital twins ♊️

Each 🧠 has a unique fingerprint.

But traditional cooperative-only models miss its essence: your model and a random stranger's are easily confused. Hardly "personalised"...

Allow competition, and it becomes clear which model was yours!

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2/ Improved fit

Competitive interactions dramatically improve model fit to human, 🐒 & 🐭 FC.

The model does not *have to* include negatives – but it chooses to!

In humans, competition improves model "cognitive matching" to >100 meta-analytic patterns from NeuroSynth

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1/ Introducing competition

Most whole-brain models assume that regions cooperate (as A goes up, so does B)

Our generative model also allows competitive (negative-sign) interactions. As A gets more active, it can suppress B

We test if this improves model fit in human, 🐒 & 🐭

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Competitive interactions shape mammalian brain network dynamics and computation - Nature Neuroscience Brain network architecture may balance cooperation and competition across circuits. Here the authors use computational whole-brain modeling across three species to show that models with competition ar...

Just out in @natneuro.nature.com! 🧠

“Competitive interactions shape mammalian brain network dynamics and computation”
www.nature.com/articles/s41...

Is large-scale brain communication purely cooperative — or is competition a core organizing principle?

We built 🧠 models to find out: read on🧵👇

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9/ Wonderful collaboration with extremely talented colleagues: Hana Ali, @zhenqi.bsky.social , Filip Milisav, @gozziale.bsky.social , Danilo Bzdok, & @misicbata.bsky.social (& thanks to our AI neuroscience experts 🤖 of course!)

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GitHub - Hana-Ali/neuroLLM Contribute to Hana-Ali/neuroLLM development by creating an account on GitHub.

8/ The Big Picture

To sum up: AI-powered synthesis of the neuroscience literature brings together a scattered literature to identify emergent patterns across disparate subfields, modalities, and species.

Try it yourself with our GitHub repo: github.com/Hana-Ali/neu...

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7/ Mapping disorder involvement ⚕️

We derive regional risk maps for 30+ brain disorders 🧠🩹. Their clustering aligns with official ICD-11 clinical classification 🩺 better than clustering maps of risk-gene expression 🧬, & recover symptom co-morbidities

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6/ From shared function to shared co-activation

Regions’ LLM-derived cognitive similarity predicts functional co-activation from fMRI, and effects of direct stimulation ⚡️ better than anatomical connectivity, molecular profile, or spatial proximity - also in 🐭&🐒

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5/ Conserved molecular circuits for cognition 🧬🧠

We can also extend to macaque🐒 & mouse🐭 previous human studies based on NeuroSynth (Hansen 2021 Nat Hum Behav; Luppi 2024 Nat Biomed Eng). Integration w/ species-specific gene expression 🧬 reveals a cross-species molecular circuit for cognition

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