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Posts by Kirti

Schematic of the key prediction tested in this work. As the transversion (Tv) mutation bias of WT E. coli is shifted away from the ancestral bias, the resulting distribution of fitness effects (DFE) is predicted to change. Specifically, it should shift left with a bias reinforcement, with a lower fraction of beneficial mutations. In contrast, reversing the ancestral bias is predicted to cause right-shifted DFEs with higher proportions of beneficial mutations.

Schematic of the key prediction tested in this work. As the transversion (Tv) mutation bias of WT E. coli is shifted away from the ancestral bias, the resulting distribution of fitness effects (DFE) is predicted to change. Specifically, it should shift left with a bias reinforcement, with a lower fraction of beneficial mutations. In contrast, reversing the ancestral bias is predicted to cause right-shifted DFEs with higher proportions of beneficial mutations.

Mutations generate variation, critical for #evolution, but #MutationBias restricts the choice of mutation type. @deepaagashe.bsky.social &co use #Ecoli strains with different mutation biases to show that changing an old bias should yield more beneficial mutations @plosbiology.org πŸ§ͺ plos.io/46LjCRt

9 months ago 65 25 0 3
Pulsing genes and nuances in expression. Differences in the pulsatile expression of the mar system visualized in various engineered E. coli bacteria using fluorescence. Β© Guet group

Pulsing genes and nuances in expression. Differences in the pulsatile expression of the mar system visualized in various engineered E. coli bacteria using fluorescence. Β© Guet group

Could gut microbes have evolved molecular clockwork just for antibiotic resistance?

Read more: ista.ac.at/en/news/cloc...

New paper by former ISTA postdoc Kirti Jain and Professor Calin Guet in @pnas.org.

#Antibiotics #AntibioticResistance #GeneRegulatoryNetwork #Ecoli #Homeostasis #Evolution

1 year ago 6 1 2 0

We discovered that the pulsatile nature of its basal expression is linked to the marR start codon, GTG. We found that basal expression confers a fitness adv by shortening lag time during transitions in growth phases, suggesting a broader role for the mar operon in maintaining growth homeostasis 2/2

1 year ago 1 0 0 0
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Pulsatile basal gene expression as a fitness determinant in bacteria | PNAS Active regulation of gene expression, orchestrated by complex interactions of activators and repressors at promoters, controls the fate of organism...

doi.org/10.1073/pnas... Can basal (uninduced) gene expression play a role in fitness? I am excited to share findings from my postdoctoral project, where we investigated the basal expression of the mar operonβ€”a key regulator of antibiotic resistance in enteric bacteria (E. coli) 1/2

1 year ago 2 0 1 0