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Posts by SPC Facility & Garcia-Alai Lab

Graphical abstract for pre-print showing a) theoretical model for thermostability, b) a GUI based analysis platform, c) protein denaturation data of mini-binders assessed by nanoDSF and d) a correlation plot that shows the de novo designed mini-binders have a much lower deltaCp than expected for a protein of their size.

Graphical abstract for pre-print showing a) theoretical model for thermostability, b) a GUI based analysis platform, c) protein denaturation data of mini-binders assessed by nanoDSF and d) a correlation plot that shows the de novo designed mini-binders have a much lower deltaCp than expected for a protein of their size.

Why are de novo designed proteins so extremely thermostable?

We try to answer this question by dissecting the thermodynamics of unfolding of mini-binders emerging from our protein design pipeline โ€“ and establish a convenient GUI for data analysis in the process.

doi.org/10.64898/202...

1 week ago 41 10 3 0

@cssbhamburg.bsky.social

1 week ago 1 0 0 0
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New preprint out ๐Ÿš€

De novo designed proteins are often too stable โ€” but why?

Using CheMelt, we show that their exceptional thermostability is largely driven by unusually low heat capacity changes (ฮ”Cp).

๐Ÿ‘‰ www.biorxiv.org/content/10.6...

@embl.org @osvalb.bsky.social @proteinmagnus.bsky.social

1 week ago 7 2 1 0
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The analysis tool is part of the eSPC package developed by @osvalb.bsky.social & @spcembl.bsky.social from EMBL Hamburg.

User-friendly analysis software for many biophysical techniques. Typically the eSPC software is better than that provided with the instrument:

spc.embl-hamburg.de

1 week ago 4 1 3 0

@cssbhamburg.bsky.social @lucasdefelipe.bsky.social

2 weeks ago 0 0 0 0
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New on bioRxiv ๐Ÿงช ๐Ÿ“„

A fresh look at how domain-specific ligand binding controls TRPM2 activation โ›“๏ธโ€๐Ÿ’ฅ

This work disentangles the roles of distinct nucleotide-binding domains and their contribution to gating โ€” a long-standing question in the field. ๏ฟผ

๐Ÿ‘‰ www.biorxiv.org/content/10.6...

@embl.org

2 weeks ago 2 2 1 0
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Very exciting demo on smFRET &FCCS measurements in our SPC facility this week with Exciting Instruments @ei-science.bsky.social โœจ๐Ÿงฎ

Thank you for allowing us to measure single molecule resolution using your technology.

It has been again, very exciting ๐Ÿ”๐Ÿคฉ

@embl.org @cssbhamburg.bsky.social

1 month ago 3 1 0 0

@osvalb.bsky.social @cssbhamburg.bsky.social @embl.org

2 months ago 1 0 0 0
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New protocol out now! ๐Ÿ“•๐Ÿ–Š๏ธ๐Ÿ”

A practical workflow for analyzing CD thermal unfolding of short RNAs โ€” from SVD decomposition to two-state fitting to extract melting temp and enthalpy with ChiraKit.

A must-see if youโ€™re working with RNA structure and CD data.

DOI: 10.1007/978-1-0716-5084-4_12 ๏ฟผ

2 months ago 6 2 1 0
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Clathrin adaptors drive phase separation in endocytosis and trafficking Liquid-liquid phase separation (LLPS) underlies the formation of biomolecular condensates that organize cellular processes, including endocytosis and membrane trafficking. Although LLPS has been impli...

New preprint out!๐Ÿ“ƒ

This work uncovers how the clathrin adaptors Ent5 & Sla2
undergo LLPS, revealing distinct structural drivers that shape endocytic and trafficking dynamics.

@lucasdefelipe.bsky.social @katharinchen.bsky.social @embl.org @cssbhamburg.bsky.social

๐Ÿ‘‰ www.biorxiv.org/content/10.1...

5 months ago 12 6 0 0

@mpimarinemicrobio.bsky.social @cssbhamburg.bsky.social

7 months ago 0 1 0 0
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New paper from our postdoc @fedevignale.bsky.social, et.al!

Studying microbialites in Argentina ๐Ÿ‡ฆ๐Ÿ‡ท, they show how extreme, early Earth-like conditions shape microbes, minerals & biosignatures- insights for Earthโ€™s past and life beyond ๐ŸŒŽ ๐Ÿงฌ.

๐Ÿ‘‰ www.nature.com/articles/s43...

@embl.org @ebi.embl.org

7 months ago 6 3 2 0

Weโ€™re looking for a GL!

Join us at EMBL Hamburg! ๐Ÿงซ๐Ÿฆ ๐Ÿงฌ

The position will be based at CSSB @cssbhamburg.bsky.social , an interdisciplinary research centre focused on infection biology, and will be integrated into EMBL's research programme. @embl.org

Find out more and apply here: lnkd.in/dJU9pee7

7 months ago 2 1 0 0

At EMBL Grenoble, lead an independent research group using bold, original approaches to integrate complementary structural biology methods with emerging nano X-ray imaging technologies, bridging scales and modalities to unravel molecular mechanisms.

embl.wd103.myworkdayjobs.com/en-US/EMBL/d...

8 months ago 1 2 0 0

Check it out the latest open position to join EMBL in Heidelberg!
@embl.org

7 months ago 0 0 0 0
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Congrats to the Grรผnewald, Topf groups & et. al @cssbhamburg.bsky.social on their Nature paper! ๐Ÿ“ƒ ๐Ÿพ

Trapping and resolving the elusive prefusion form of HSV gB - neutralizing HSV-1 & HSV-2 with a single nanobody is no small feat!๐Ÿฆ™

Glad that our SPC facility have contributed to this work!@embl.org

7 months ago 5 3 0 0

Excited to be part of the Instruct Centre Germany!

@jankosinski.bsky.social @landaulabcssb.bsky.social @topf-lab.bsky.social @carobarisch.bsky.social @bosse-lab.bsky.social @spcembl.bsky.social

7 months ago 9 5 0 0
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Exciting to be with part of my group at the 15th European Biophysics Congress (EBSA) in beautiful Rome, Italy ๐Ÿ‡ฎ๐Ÿ‡น

If you are around, join my talk today about tools for the analysis of biophysical data ๐Ÿ’ก๐Ÿงฉ

Check our posters for open discussion and networking !๐Ÿ“ƒ๐Ÿ–‡๏ธ

@embl.org
@cssbhamburg.bsky.social

9 months ago 3 2 0 0
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KinGenie, an online tool for the analysis of kinetics data, has been introduced on the 4th MOSBRI Scientific Conference in Paris, France ๐Ÿ‡ซ๐Ÿ‡ท

A great addition to our eSPC web server๐Ÿ’ก๐Ÿš€

Reach out to us for further input!

@osvalb.bsky.social
@mosbri.bsky.social
@embl.org
@cssbhamburg.bsky.social

10 months ago 2 0 0 1
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4th MOSBRI Scientific Conference starts today ๐Ÿ“in beautiful Paris, France ๐Ÿ‡ซ๐Ÿ‡ท

Excited to see familiar and new faces from our TNA site, network and continue collaborating on research infrastructures projects in molecular biophysics ๐Ÿงฌ๐Ÿงซ ๐Ÿค

@mosbri.bsky.social @embl.org @cssbhamburg.bsky.social

10 months ago 3 0 0 0
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Happy to co-host a workshop on lipid nanoparticles together with @embl.org Hamburg this week. The workshop is a part of the @eugloh.bsky.social โ€˜Entrepreneurship meets Health Innovation at Large-Scale Facilitiesโ€™ conference.

@landaulabcssb.bsky.social @spcembl.bsky.social

10 months ago 7 2 0 1
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Our latest research is out ๐Ÿ“„ !

This study provides an interaction map of Sla2 & the regulatory proteins Sla1 & Pan1, predicted by AI modeling & confirmed by molecular biophysics.

@lucasdefelipe.bsky.social @meytallandau.bsky.social
@emilgustavsson.bsky.social
@embl.org
@cssbhamburg.bsky.social

11 months ago 12 8 0 0
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ChiraKit: an online tool for the analysis of circular dichroism spectroscopy data Abstract. Circular dichroism (CD) spectroscopy is an established biophysical technique to study chiral molecules. CD allows investigating conformational ch

Now publication NAR is online:

doi.org/10.1093/nar/...

11 months ago 1 0 0 0

This project was conceived as a collaboration in the frame of MOSBRI @mosbri.bsky.social

11 months ago 0 0 0 0
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๐Ÿ”Š Thrilled to share our latest work, just published in NAR! ๐Ÿ“ƒ

We present ChiraKit, open-source tool to process raw CD data and perform advanced analysis!

Access via our eSPC web-server!

โžก๏ธ spc.embl-hamburg.de
@osvalb.bsky.social @lucasdefelipe.bsky.social @embl.org @cssbhamburg.bsky.social

11 months ago 9 3 1 1

Tanks for the nice feedback! Peer-reviewed publication coming soon ๐Ÿ˜‰๐Ÿ‘

11 months ago 1 0 0 0
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ChiraKit, an online tool for the analysis of circular dichroism spectroscopy data Circular dichroism (CD) spectroscopy is an established biophysical technique to study chiral molecules. CD allows investigating conformational changes under varying experimental conditions and has bee...

Just want to say thanks to @spcembl.bsky.social for developing ChiraKit and allowing quick and informative analysis of CD data - more here www.biorxiv.org/content/10.1...
best news of the day today as we were stuck with beautiful but hard to analyze data ๐Ÿ™‚ #scienceisawesome

11 months ago 5 2 2 0

We're hosting an Ask Me Anything about Biophysics on Bluesky today with BPS Ambassador Alumnus Gonzalo de Prat Gay! Tweet your questions with #BiophysicsAMA and tune in at 11am USA Eastern time.

1 year ago 3 2 0 2

๐ŸšจThe registration for the Functional #Amyloid Meeting is finally open, check it out on landau-cssb.de

๐Ÿงช๐Ÿงฌ๐Ÿงถ

1 year ago 5 3 0 0
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Congratulations to George who had his PhD defense today! ๐Ÿฅ‚๐Ÿพ๐Ÿฅณ๐ŸŽ‰ @uni-hamburg.de @embl.org @cssbhamburg.bsky.social

1 year ago 16 0 0 3