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Posts by Ruben Dries

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#osteosarcoma #singlecell #spatialtranscriptomics #tumormicroenvironment #comparativeoncology #bioinformatics #cancerresearch | Yogesh Budhathoki ๐ŸŽ‰ First-author preprint now available on bioRxiv! ๐ŸŽ‰ Iโ€™m excited to share our latest work, presenting an integrative single-cell and spatial transcriptomic analysis of osteosarcoma, mapping cellular ec...

Sharing a new biorxiv paper that I helped out on. We compiled osteosarcoma #SingleCell RNAseq data from humans, canines, mouse and PDX models - both primary and mets. We found interesting tumor subpopulations. Should be a very useful resource to study OS!
๐Ÿงฌ ๐Ÿ–ฅ๏ธ
www.linkedin.com/posts/yogibu...

3 months ago 3 2 2 0
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Giotto Suite: a multiscale and technology-agnostic spatial multiomics analysis ecosystem - Nature Methods Giotto Suite provides a comprehensive, flexible and scalable platform for technology-agnostic spatial omics analysis using R.

Giotto Suite provides a comprehensive, flexible and scalable platform for technology-agnostic spatial omics analysis using R. @rndries.bsky.social

www.nature.com/articles/s41...

6 months ago 9 4 0 0

Very proud to finally publish Giotto Suite after many years of hard work. It's a big milestone for our lab and will be a massive stepping stone for our ongoing projects and ideas. Take a look at giottosuite.com and feel free to share feedback and ideas for improvement.

6 months ago 3 2 0 1
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KODAMA goes spatial.
doi.org/10.1101/2025...
#spatialtranscriptomics #visium #visiumhd #seurat #giotto

10 months ago 14 15 0 1
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Method of the Year 2024: spatial proteomics - Nature Methods Approaches for profiling the spatial proteome in tissues are the basis of atlas-scale projects that are delivering on their promise for understanding biological complexity in health and disease.

And the method of the year is .... Spatial Proteomics www.nature.com/articles/s41...

1 year ago 10 4 0 0
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Whole-brain spatial transcriptional analysis at cellular resolution

Incredible study - 3D single cell imaging of the entire mouse brain - also on the cover of this week's #Science
๐Ÿงช๐Ÿ”ฌ๐Ÿคฏ

www.science.org/doi/10.1126/...

1 year ago 65 18 0 2

Starter a Spatial Tissue Profling/Omics/Biology Startup package. Will be updating often.
Please stop by again soon!
go.bsky.app/7a9Frz9

1 year ago 46 22 19 0