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Posts by Shane Hogle

Orange sign inside restaurant: IN THE PAST WEEK, WE HAVE HAD THREE PICK POCKETS AND STOLEN WALLETS AT THE FINNISH BISTRO.
THESE HAVE BEEN BASED ON OPPORTUNITY AND DISTRACTION
DIRECTLY IN YOUR FACE.
THEY ARE NOT VIOLENT BUT VERY SNEAKY AND EXPERIENCED.
ALL ARE CHATTY WHITE MEN LATE 20'S TO MIDDLE AGED.
NEVER LEAVE YOUR PURSE OR BACKPACK UNATTENDED AND TRUST YOUR GUT WITH ALL INTERACTIONS WITH THESE CRIMES OF OPPORTUNITY.
latural

Orange sign inside restaurant: IN THE PAST WEEK, WE HAVE HAD THREE PICK POCKETS AND STOLEN WALLETS AT THE FINNISH BISTRO. THESE HAVE BEEN BASED ON OPPORTUNITY AND DISTRACTION DIRECTLY IN YOUR FACE. THEY ARE NOT VIOLENT BUT VERY SNEAKY AND EXPERIENCED. ALL ARE CHATTY WHITE MEN LATE 20'S TO MIDDLE AGED. NEVER LEAVE YOUR PURSE OR BACKPACK UNATTENDED AND TRUST YOUR GUT WITH ALL INTERACTIONS WITH THESE CRIMES OF OPPORTUNITY. latural

Beware chatty white men at the Finnish Bistro

1 week ago 328 60 28 44
The Beautiful Intelligence of Bacteria and Other Microbes Bacterial biofilms and slime molds are more than crude patches of goo. Detailed time-lapse microscopy reveals how they sense and explore their surroundings, communicate with their neighbors and…

folks checking out pictures of the moon when I'm like www.quantamagazine.org/the-beautifu...

1 week ago 0 0 0 0
Predator-driven microbial feedback loops promote plant health - Nature Communications Top-down trophic interactions are critical drivers of microbiome dynamics but are difficult to predict. Here, the authors demonstrate that nematode-driven shifts in microbiomes enhance pathogen suppre...

We've got a new paper about the consequences of microfaunal predation for bacterial community structure and function. 🧪🦠 #microbiome #MicroSky

www.nature.com/articles/s41...

4 weeks ago 3 3 1 0

Results suggest that trophic complexity in soil microbial ecosystems have important emergent effects on plant and ecosystem health.

This was a very fun collab with colleagues/friends in China, and coincided with Huiyu spending a year in my lab here in Finland

4 weeks ago 0 0 0 0
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The net result is that plant productivity is always substantially greater in the presence of predators, and this productivity boost is greater than the sum of its individual parts.

4 weeks ago 0 0 1 0
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We find that nematode predation indirectly suppresses plant pathogens by modulating bacterial interactions, making native soil bacteria more antagonistic towards an invasive pathogen.

4 weeks ago 2 0 1 0
Predator-driven microbial feedback loops promote plant health - Nature Communications Top-down trophic interactions are critical drivers of microbiome dynamics but are difficult to predict. Here, the authors demonstrate that nematode-driven shifts in microbiomes enhance pathogen suppre...

We've got a new paper about the consequences of microfaunal predation for bacterial community structure and function. 🧪🦠 #microbiome #MicroSky

www.nature.com/articles/s41...

4 weeks ago 3 3 1 0
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Actually, Americans are just like you. ~20-30% of them genuinely support fascism, as in ~every 🇪🇺 country. You are just more fortunate to have political institutions & a multiparty system that prevent that 20-30% from fully capturing the center-right party, becoming 51%, & controlling the government.

1 month ago 3882 911 167 102
Abstract: Under the banner of progress, products have been uncritically adopted or
even imposed on users — in past centuries with tobacco and combustion engines, and in
the 21st with social media. For these collective blunders, we now regret our involvement or
apathy as scientists, and society struggles to put the genie back in the bottle. Currently, we
are similarly entangled with artificial intelligence (AI) technology. For example, software updates are rolled out seamlessly and non-consensually, Microsoft Office is bundled with chatbots, and we, our students, and our employers have had no say, as it is not
considered a valid position to reject AI technologies in our teaching and research. This
is why in June 2025, we co-authored an Open Letter calling on our employers to reverse
and rethink their stance on uncritically adopting AI technologies. In this position piece,
we expound on why universities must take their role seriously toa) counter the technology
industry’s marketing, hype, and harm; and to b) safeguard higher education, critical
thinking, expertise, academic freedom, and scientific integrity. We include pointers to
relevant work to further inform our colleagues.

Abstract: Under the banner of progress, products have been uncritically adopted or even imposed on users — in past centuries with tobacco and combustion engines, and in the 21st with social media. For these collective blunders, we now regret our involvement or apathy as scientists, and society struggles to put the genie back in the bottle. Currently, we are similarly entangled with artificial intelligence (AI) technology. For example, software updates are rolled out seamlessly and non-consensually, Microsoft Office is bundled with chatbots, and we, our students, and our employers have had no say, as it is not considered a valid position to reject AI technologies in our teaching and research. This is why in June 2025, we co-authored an Open Letter calling on our employers to reverse and rethink their stance on uncritically adopting AI technologies. In this position piece, we expound on why universities must take their role seriously toa) counter the technology industry’s marketing, hype, and harm; and to b) safeguard higher education, critical thinking, expertise, academic freedom, and scientific integrity. We include pointers to relevant work to further inform our colleagues.

Figure 1. A cartoon set theoretic view on various terms (see Table 1) used when discussing the superset AI
(black outline, hatched background): LLMs are in orange; ANNs are in magenta; generative models are
in blue; and finally, chatbots are in green. Where these intersect, the colours reflect that, e.g. generative adversarial network (GAN) and Boltzmann machine (BM) models are in the purple subset because they are
both generative and ANNs. In the case of proprietary closed source models, e.g. OpenAI’s ChatGPT and
Apple’s Siri, we cannot verify their implementation and so academics can only make educated guesses (cf.
Dingemanse 2025). Undefined terms used above: BERT (Devlin et al. 2019); AlexNet (Krizhevsky et al.
2017); A.L.I.C.E. (Wallace 2009); ELIZA (Weizenbaum 1966); Jabberwacky (Twist 2003); linear discriminant analysis (LDA); quadratic discriminant analysis (QDA).

Figure 1. A cartoon set theoretic view on various terms (see Table 1) used when discussing the superset AI (black outline, hatched background): LLMs are in orange; ANNs are in magenta; generative models are in blue; and finally, chatbots are in green. Where these intersect, the colours reflect that, e.g. generative adversarial network (GAN) and Boltzmann machine (BM) models are in the purple subset because they are both generative and ANNs. In the case of proprietary closed source models, e.g. OpenAI’s ChatGPT and Apple’s Siri, we cannot verify their implementation and so academics can only make educated guesses (cf. Dingemanse 2025). Undefined terms used above: BERT (Devlin et al. 2019); AlexNet (Krizhevsky et al. 2017); A.L.I.C.E. (Wallace 2009); ELIZA (Weizenbaum 1966); Jabberwacky (Twist 2003); linear discriminant analysis (LDA); quadratic discriminant analysis (QDA).

Table 1. Below some of the typical terminological disarray is untangled. Importantly, none of these terms
are orthogonal nor do they exclusively pick out the types of products we may wish to critique or proscribe.

Table 1. Below some of the typical terminological disarray is untangled. Importantly, none of these terms are orthogonal nor do they exclusively pick out the types of products we may wish to critique or proscribe.

Protecting the Ecosystem of Human Knowledge: Five Principles

Protecting the Ecosystem of Human Knowledge: Five Principles

Finally! 🤩 Our position piece: Against the Uncritical Adoption of 'AI' Technologies in Academia:
doi.org/10.5281/zeno...

We unpick the tech industry’s marketing, hype, & harm; and we argue for safeguarding higher education, critical
thinking, expertise, academic freedom, & scientific integrity.
1/n

7 months ago 3944 1974 111 406

REGIME CHANGE 🇺🇸

3 months ago 3167 648 56 125
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That's how it's done! Nice and easy.
Good job Mycological Society of America.

1 year ago 28 9 1 1
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Revised and Extended: What's Happening Inside the NIH and NSF

For Finnish colleagues: this is a good overview of what’s going on right now with American science funding institutions

www.science.org/content/blog...

1 year ago 2 0 0 0
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OpenAI and the CSU system bring AI to 500,000 students & faculty The largest deployment of ChatGPT to date will expand the use of AI in education and help the United States build an AI-ready workforce.

I hope the faculty AI likes reading 40,000 student AI term papers about how The Great Gatsby is racist, because that is all CSU is going to be now:

openai.com/index/openai...

1 year ago 11 5 1 0
Were Precambrian oceans devoid of planktonic cyanobacteria? Insights from metabolism

New preprint! Were Precambrian oceans devoid of planktonic cyanobacteria? Insights from metabolism

What does rise of marine picocyanobacteria ~500 million years ago teach us about Great Oxidation Event ~2.3 billion years ago? Follow along to find out... 1/

doi.org/10.31223/X5M...

1 year ago 5 2 1 0

curing cancer is woke now

1 year ago 9 2 0 0

I WILL pull this car over right now!

1 year ago 39 0 0 0
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Sad to wake up this morning in Finland and seeing SoCal on fire. Thoughts are with my friends and family in LA area

1 year ago 1 0 0 0

Incredible

1 year ago 2 0 1 0
An altered bluesky DM inbox screencap. There are three messages. The first two from predictably botlike scantily clad ladies, Alice and Sandra. Their messages read

Hello my baby

&

Hello my honey

The third is from Michigan J Frog, his cartoon pfp as you'd imagine, tophat in hand. His message reads

Hello my ragtime gal.

An altered bluesky DM inbox screencap. There are three messages. The first two from predictably botlike scantily clad ladies, Alice and Sandra. Their messages read Hello my baby & Hello my honey The third is from Michigan J Frog, his cartoon pfp as you'd imagine, tophat in hand. His message reads Hello my ragtime gal.

Wow, what are the odds?!

1 year ago 7237 1112 73 35
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Global niche partitioning of purine and pyrimidine cross-feeding among ocean microbes Global marine microbial marketplace for DNA building blocks drives biogeochemical cycling and ecological signaling in the ocean.

Very excited to share final version of our paper! What forces shape evolution of cross-feeding among planktonic ocean microbes, and how does it in turn drive self-organization of biogeochemical cycles? These are the questions we explore here:

www.science.org/doi/full/10....

1 year ago 52 13 1 2
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Temporal Changes in the Role of Species Sorting and Evolution Determine Community Dynamics Evolutionary change within community members and shifts in species composition contribute to community and trait dynamics. To integrate when and how both processes structure communities, we estimated...


Temporal Changes in the Role of Species Sorting and Evolution Determine Community Dynamics

Ecology Letters by Julius Hoffmann, @slhogle.bsky.social, @teppo-h.bsky.social, and Lutz Becks

onlinelibrary.wiley.com/doi/10.1111/...

1 year ago 10 4 0 0
THE GREEN LIGHT, Episode 3: Seppe Kuehn - Unveiling Mysteries of Microbial Communities
THE GREEN LIGHT, Episode 3: Seppe Kuehn - Unveiling Mysteries of Microbial Communities YouTube video by Algae People

📢A new episode of The Green Light 💚, on this Friday episode we invited @seppekuehnlab.bsky.social, a molecular plant biologist and associate professor at UChicago, to talk about their journey from physics to microbial communities assembly.👇
youtu.be/yi_qFOIyCGk

1 year ago 3 2 0 0

I worry that the academic scientist of the future will just be some kind of middle management tasked with fulfilling bureaucratic deliverables. Makes sense that young folks are turning away from this. It’s certainly not aligned with the professional ideal I had when I was in my phd

1 year ago 0 0 0 0
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Different but interesting question is what kinds of people and value systems do these conditions select for in academia 20 years in the future? We already know academia is atrophying young talent - young folks who passionately care about the world

1 year ago 0 0 1 0

Interesting read…

IMO more important that we are experiencing consequences of systematic gutting/defunding of science by govt and private orgs. Smaller pie + more seats at the table = more competition and thus potentially incentive to go against moral value system to professionally survive

1 year ago 4 0 1 0
A researcher on a boardwalk in a DANK hawaiian forest on Molokai.

A researcher on a boardwalk in a DANK hawaiian forest on Molokai.

RP PLS! Iʻm hiring 3 postdocs at U Hawaiʻi to study yeast diversity and evolution, marine fungi, and the genomics of microbiomes in experimental foodwebs. All of these projects have existing datasets and LATITUDE to pursue individual interests and "blue sky" ideas www.dropbox.com/scl/fi/5d7u4...

1 year ago 99 87 1 5

huh i always thought it meant “liberated and tardy”

1 year ago 0 0 0 0

trying to convince my son it's pronounced “Bubba Fett”

1 year ago 0 0 0 0

niche one for the filipino finnish-politics heads out there

1 year ago 0 0 0 0