🚀 Introducing the @nextflow.io Plugins Registry: a centralized repository for discovering, sharing, and managing #Nextflow plugins. We've streamlined the entire plugin lifecycle for the bioinformatics community.
🧑💻Explore today: hubs.la/Q03P_Q8t0
Attending SBI2 2025 in Boston next week? Join Ken Brewer (Scientific Solutions Lead) for the @nextflow.io for bioimaging workshop!🔬Sign up for the workshop when you register for the conference: hubs.la/Q03Ph_d10
Excited to share work with
Zhidian Zhang, @milot.bsky.social, @martinsteinegger.bsky.social, and @sokrypton.org
biorxiv.org/content/10.1...
TLDR: We introduce MSA Pairformer, a 111M parameter protein language model that challenges the scaling paradigm in self-supervised protein language modeling🧵
GFFx: A Rust-based suite of utilities for ultra-fast genomic feature extraction. #Genomics #Rust #GenomeAnnotation #GFF #GenomicFeatures @biorxiv-bioinfo.bsky.social 🧬 🖥️
www.biorxiv.org/content/10.1...
nf-core/proteinfamilies: A scalable pipeline for the generation of protein families
doi.org/10.1101/2025...
Automatic identification and annotation of MYB gene family members in plants
doi.org/10.1101/2021...
Super excited to share our review on genomic deep learning models for non-coding variant effect prediction, with Ayesha Bajwa and Nilah Ioannidis. We’d like this review to be a useful resource, and welcome any feedback, comments, or questions! 1/4
arxiv.org/abs/2411.11158
💡 Run custom applications on the same infrastructure as your @nextflow.io pipelines with Studios 🧵Read the blog to find out how! hubs.la/Q03wC-3p0
Don't miss our webinar with @bigomics.bsky.social tomorrow! Join us to discover how the integration of Omics Playground into Seqera Studios is supporting faster, scalable end-to-end omics analysis.
💻 Register now: hubs.la/Q03tjp-50
We got some amazing results from combining @seqera.io Fusion and NVIDIA Healthcare Parabricks!
Can’t wait to start implementing all of the benefits of gpu workflows across all of the @nf-co.re pipelines!
🚀 We’ve teamed up with #NVIDIA to help bioinformatics teams scale faster, analyze more efficiently, and simplify cloud operations 🧵
📖 Read now: hubs.la/Q03rQZx-0
What is This, a Crossover Episode?
So excited to see the Modern Data Stack and Modern Biotech Stack collide!
Maybe it was just the post-pandemic travel or finally meeting the @nextflow.io community in person, but @paoloditommaso.bsky.social blew my mind with Wave that day. 😂
youtu.be/PTbiCVq0-sE?...
We’ve just dropped some powerful new @nextflow.io features as part of the 25.04 release, all designed to enhance clarity, control, and collaboration in workflow development. 🎉
💡Learn more: hubs.la/Q03mQ2_10
Supporting Community at the Core of Innovation 🌍🙌
We were honored to provide space at the #NextflowSummit Boston for the incredible Boston Women in Bioinformatics group to gather, connect, and celebrate a major milestone: becoming a 501(c)(3) nonprofit! 🎉
🚀 Introducing Seqera Compute: Managed, Optimized Compute for Scalable Bioinformatics
📕Read the blog post: hubs.la/Q03mKwMb0
🔍Discover Seqera Compute: hubs.la/Q03mKxyB0
To continue advancing the vision that scientific innovation runs on software, we are thrilled to announce that Seqera has closed it’s Series B funding, led by Addition, with participation from Speedinvest, Talis, Amino Collective, BoxOne, and SNR!
Learn more: hubs.la/Q03lcmf20
Dive into Pixi Packages!
🛠️ Build packages from source
📦 Cross-platform and cross-language
✨ Build backends for powerful standards!
Currently released as a preview feature, with improvements dropping daily!
Pixi has shebang support like uv now! 😍
```
#!/usr/bin/env -S pixi exec --spec bat -- bash -e
```
pixi.sh/dev/advanced...
Severance is just docker for brains🐳🧠
New blog post! Spring cleaning 2025
https://nf-co.re/blog/2025/springcleaning/
Next week is the March 2025 @nf-co.re #hackathon! 🎉
With 44 local sites across 27 countries, this event is truly global 🌏🌏🌎
We have 992 people registered - so close to 1000!
Register here: nf-co.re/events/2025/... 🎟 ✍️
If you still need convincing, here's a little video to whet your appetite 👩🏻💻
@lionelhenry.bsky.social and I are so excited to finally announce Air - an extremely fast R code formatter! 🎉
With Air, you'll never need to worry about styling your #rstats code ever again. All you need to do is save, and Air takes care of the rest.
www.tidyverse.org/blog/2025/02...
🎤Call for Speakers! The @nextflow.io Summit returns to Boston this May!
We’re looking for speakers to showcase groundbreaking research, innovative solutions, and real-world success stories.
👉 Submit your abstract by March 14 to be part of the lineup: hubs.la/Q036sG6T0
Been looking forward to this talk since @alexpeltzer.bsky.social told me about DSO in October!
Come hang out in the #arm64 Slack channel! join.slack.com/share/enQtOD...
Attending #SLAS2025? Don't miss our exclusive Exhibitor Tutorial at 2:00 PM today in Room 24C!
In this talk, we will discuss how @nextflow.io and Seqera are simplifying the analysis of large-scale sequencing and cell imaging data!
🔗 Can't attend? Get the recording instead: hubs.la/Q034lfYZ0
Genetic coupling of enhancer activity and connectivity in gene expression control https://www.nature.com/articles/s41467-025-55900-3 🧬🖥️🧪 ...beautiful plots made with #Rstats plotgardner https://phanstiellab.github.io/plotgardener/
Is there an LSP? 👀
Stop by and say hello if you’re there!
