Running heavy bioinformatics workloads on cloud infra used to require a computer science degree. Now you just need to know how to type a sentence.

GitHub - variomeanalytics/bioinformatics-agent-skills: MCP server for bioinformatics agent skills — query a knowledge graph of 78 bioinformatics workflows directly from Claude Code MCP server for bioinformatics agent skills — query a knowledge graph of 78 bioinformatics workflows directly from Claude Code - variomeanalytics/bioinformatics-agent-skills

Claude bioinformatics Skill Graph

github.com/variomeanaly...

Pipette.bio - Bioinformatics AI Agent Run RNA-seq, single-cell, and bioinformatics pipelines by chatting with an AI. Upload FASTQ, ask questions, get figures and reports. Free tier available.

Most tools stop at the volcano plot.

Pipette.bio keeps going.

After running differential expression, it automatically:
• Scans PubMed & literature
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• Suggests your next experiment

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Our preprint is live now

Pipette: Encoding scientific literature into an executable Skill Graph for multi-agent bioinformatics

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Pipette: Encoding scientific literature into an executable Skill Graph for multi-agent bioinformatics [new]
Orchestrate E2E workflows from NL, ensuring biologically valid analytical transitions via its literature-derived constraints.

Pipette: Encoding scientific literature into an executable Skill Graph for multi-agent bioinformatics #SingleCell 🧪🧬🖥️
www.biorxiv.org/content/10.64898/2026.04...

Pipette.bio - Bioinformatics AI Agent Run RNA-seq, single-cell, and bioinformatics pipelines by chatting with an AI. Upload FASTQ, ask questions, get figures and reports. Free tier available.

Upload FASTQ/BAM/h5 → ask in plain English → get figures, tables, and hypotheses in minutes.

No code. No queue. Full provenance included.

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“Agentic AI” in biology doesn’t mean autonomous AI doing science. It means: decompose a biological question into steps, pick the right tools, run them, check the output. The biologist decides what to ask. The AI handles the wiring.

Pipette: for when ‘reproducible’ means more than ‘it worked on my laptop once.

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sequencing costs: 📉📉📉 analysis bottleneck: 📈📈📈
us: 👋

Most biologists don’t need to learn to code. they need their analyses done correctly. different thing

“I’ll just learn R real quick’ — famous last words of every wet-lab biologist

Pipette.bio - AI Platform for RNA-seq, Single-Cell & Genomics Analysis Run RNA-seq, single-cell, and genomics pipelines by chatting with an AI. Upload FASTQ, ask questions, get figures and reports. Free tier available.

Go beyond just raw numbers. Pipette.bio connects your results to AlphaFold and PubMed to help you interpret the biological significance of your findings in real time. Efficient, transparent, and built for labs.

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Pipette.bio - AI Platform for RNA-seq, Single-Cell & Genomics Analysis Run RNA-seq, single-cell, and genomics pipelines by chatting with an AI. Upload FASTQ, ask questions, get figures and reports. Free tier available.

When a postdoc leaves, does your bioinformatics knowledge leave with them? Pipette doesn't just run code; it takes notes and learns your lab's specific preferences. Every analysis stays in-house and builds on the last. Keep your lab's intelligence where it belongs.

pipette.bio

Pipette.bio - AI Platform for RNA-seq, Single-Cell & Genomics Analysis Run RNA-seq, single-cell, and genomics pipelines by chatting with an AI. Upload FASTQ, ask questions, get figures and reports. Free tier available.

Don't fear "Reviewer 2" and their questions about your software versions. Pipette.bio automatically tracks every tool, parameter, and environment used in your analysis. Generate a transparent, citable methods section with one click. Scientific rigor made simple at Pipette.bio.

Pipette.bio - AI Platform for RNA-seq, Single-Cell & Genomics Analysis Run RNA-seq, single-cell, and genomics pipelines by chatting with an AI. Upload FASTQ, ask questions, get figures and reports. Free tier available.

Bridge the gap between the bench and the server. Whether it is single-cell RNA-seq or variant calling, Pipette.bio lets you command complex pipelines without mastering the command line.

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Pipette.bio - AI Platform for RNA-seq, Single-Cell & Genomics Analysis Run RNA-seq, single-cell, and genomics pipelines by chatting with an AI. Upload FASTQ, ask questions, get figures and reports. Free tier available.

The best science happens when the wet-dry lab loop is tight. Pipette allows bench scientists to iterate on their data in real time. No more waiting weeks for a core facility to fix a small parameter. Adjust, re-run, and discover while the bench work is still fresh.
Pipette.bio

Pipette.bio - AI Platform for RNA-seq, Single-Cell & Genomics Analysis Run RNA-seq, single-cell, and genomics pipelines by chatting with an AI. Upload FASTQ, ask questions, get figures and reports. Free tier available.

Scientific rigor matters. Pipette.bio provides full provenance for every analysis, including tool versions and exact parameters. It is an AI assistant built for the high standards of a peer-reviewed paper. See the methodology for yourself: pipette.bio

Pipette.bio - AI Platform for RNA-seq, Single-Cell & Genomics Analysis Run RNA-seq, single-cell, and genomics pipelines by chatting with an AI. Upload FASTQ, ask questions, get figures and reports. Free tier available.

Bioinformatics shouldn't be the bottleneck in your research. Pipette.bio allows you to move from raw sequencing data to publication-ready figures using natural language. No more waiting for custom scripts to run.

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Pipette.bio - AI Platform for RNA-seq, Single-Cell & Genomics Analysis Run RNA-seq, single-cell, and genomics pipelines by chatting with an AI. Upload FASTQ, ask questions, get figures and reports. Free tier available.

Spatial transcriptomics and single-cell RNA-seq offer unprecedented resolution, but the data is a nightmare to process. Pipette.bio turns these complex workflows into a simple conversation. Move from raw sequencing to tissue maps in minutes.
Pipette.bio

Pipette.bio - AI Platform for RNA-seq, Single-Cell & Genomics Analysis Run RNA-seq, single-cell, and genomics pipelines by chatting with an AI. Upload FASTQ, ask questions, get figures and reports. Free tier available.

Bioinformatics should generate answers, not just plots. Pipette.bio connects your results to PubMed and AlphaFold to suggest actionable hypotheses for your next experiment. It is not just an analysis tool; it is a partner in your scientific discovery process.
Pipette.bio

Pipette.bio - AI Platform for RNA-seq, Single-Cell & Genomics Analysis Run RNA-seq, single-cell, and genomics pipelines by chatting with an AI. Upload FASTQ, ask questions, get figures and reports. Free tier available.

Enhance your research with Pipette, our bioinformatics AI agent. Pipette boosts data analysis and discovery speed. Enjoy seamless integration and insights tailored to your research goals. Visit us to transform your research journey! pipette.bio

Pipette.bio - AI Platform for RNA-seq, Single-Cell & Genomics Analysis Run RNA-seq, single-cell, and genomics pipelines by chatting with an AI. Upload FASTQ, ask questions, get figures and reports. Free tier available.

Don't let a lack of bioinformatics staff limit your project scope. Pipette.bio acts as a digital team member that scales with your lab. Run more experiments and analyze more samples without the overhead of a new hire or a dedicated compute cluster.
Pipette.bio

Pipette.bio - AI Platform for RNA-seq, Single-Cell & Genomics Analysis Run RNA-seq, single-cell, and genomics pipelines by chatting with an AI. Upload FASTQ, ask questions, get figures and reports. Free tier available.

Ready to see your data differently? Sign up for Pipette.bio and get free credits to run your first analysis. Experience a full RNA-seq or single-cell pipeline in minutes, with no credit card required. See why labs are switching to AI-driven genomics at Pipette.bio.

Unlock the future of bioinformatics with our AI agent. Streamline data analysis with enhanced efficiency and accuracy. Sign up for seamless integration, advanced analytics, and a user-friendly interface that transforms bioinformatics research. Visit Pipette.bio

Pipette.bio - AI Platform for RNA-seq, Single-Cell & Genomics Analysis Run RNA-seq, single-cell, and genomics pipelines by chatting with an AI. Upload FASTQ, ask questions, get figures and reports. Free tier available.

Reviewers shouldn't have to guess your pipeline parameters. Pipette.bio generates automated, transparent reports that list every tool version and environment used. Submit your manuscript with confidence, knowing your bioinformatics is fully citable and reproducible.
Pipette.bio

Pipette.bio - AI Platform for RNA-seq, Single-Cell & Genomics Analysis Run RNA-seq, single-cell, and genomics pipelines by chatting with an AI. Upload FASTQ, ask questions, get figures and reports. Free tier available.

Discover the power of our cutting-edge Bioinformatics AI, designed to enhance research and data analysis with @claudeai Skills.

Pipette offers exceptional efficiency and precision.

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Pipette.bio - AI Platform for RNA-seq, Single-Cell & Genomics Analysis Run RNA-seq, single-cell, and genomics pipelines by chatting with an AI. Upload FASTQ, ask questions, get figures and reports. Free tier available.

Ten years from now, students will find it strange that scientists spent weeks learning command line tools for standard data. Science advances when tools become invisible. Move from raw data to results in minutes. Join the future at Pipette.bio.

Pipette.bio - AI Platform for RNA-seq, Single-Cell & Genomics Analysis Run RNA-seq, single-cell, and genomics pipelines by chatting with an AI. Upload FASTQ, ask questions, get figures and reports. Free tier available.

We don't ask biologists to write PCR firmware, so why expect them to write pipeline scripts? Science advances when tools become invisible and questions remain. Pipette.bio makes bioinformatics a conversation, not a coding hurdle. Move faster at Pipette.bio.

Pipette is designed to assist biologists in analyzing their raw data effortlessly, without the need for coding skills. This enables researchers to focus on their scientific inquiries while it handles the complex computational tasks, providing intuitive insights and streamlined data interpretation.