Biophysical modeling to develop and test mechanistic hypotheses underlying pharmacological EEG biomarkers.
Top: Modeling EEG biomarkers begins with picking a specific brain signal that is reliably different between patient populations. An example of a hypothetical EEG biomarker is an auditory event related potential (ERP) that is suppressed in post-treatment (red) relative to pre-treatment (blue). Middle: Biophysical modeling allows for testing mechanistic hypotheses that explain how EEG biomarkers emerge and change with drugs. Hypotheses about which drug mechanisms lead to distinct brain activity patterns must be constructed, and corresponding model parameters identified. Bottom: The default HNN model is used as a starting point to test hypotheses by either manually altering the values of the chosen model parameters, or using automated optimization and inference algorithms. Differences in parameter values pre-to post-treatment correspond to model-based predictions.
Happy to share a new preprint from the @hnnsolver.bsky.social team!🧠💻🎉
"Uncovering putative neural mechanisms of neurotherapeutic impacts on EEG using the Human Neocortical Neurosolver"
📝 www.biorxiv.org/content/10.6...
5 days ago
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The Orange Cat Brain Atlas is here. 🧠🐈
Today, we published the first comprehensive cellular map of the orange cat brain. The new atlas reveals a single, specialized neuron responsible for behaviors like staring at walls, knocking objects off tables, and the 3am "zoomies."
3 weeks ago
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Mental gymnastics meme.
TOP: Regression mental gymnastics. The effect is significant...even when I adjust for...everything we have measured.
BOTTOM: Causal Inference Mental Gymnastics.
unmeasured confounds could explain the effect
the sample might suffer from selection bias
differential measurement error!
SUTVA violation!
Almost done with my next lecture, so going back now to work on some new memes
2 months ago
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Neuroscience has a species problem
If neuroscience is serious about building general principles of brain function, cross-species dialogue must become a core organizing principle.
The biggest problem holding neuroscience back right now isn’t data or tools, thanks in large part to the BRAIN Initiative.
It’s fragmentation across species. I wrote this to hopefully spark discussion around an issue that can only be solved as a community👇
www.thetransmitter.org/animal-model...
2 months ago
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main goal for this year: find a new job! 🙂
looking for a role with fun & complex technical challenges & within a great community. my main expertise is in signal processing/EEG/MEG, but topic-wise I am quite flexible.
science/industry both great! starting mid-year. nschawor.github.io/cv
3 months ago
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a woman says we have to work together in front of a wentworth sign
ALT: a woman says we have to work together in front of a wentworth sign
Passionate about women's mental health?
Interested in brain stimulation?
Excited by cutting edge neurotech?
Come do a PhD with me!
www.findaphd.com/phds/project...
(thread)
4 months ago
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I have so many issues with this podcast with @earlkmiller.bsky.social . I think that this podcast nicely shows why I have trouble with such approaches. Lets go through some of the claims.
5 months ago
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If you are at #SfN2025, come see me at my poster LBP022.7 on Sun 8-12 to talk about the next generation HNN that we have been working on over the past year 🧠🧪also check out our new updated website & textbook built by @asoplata.bsky.social & Dylan Daniels @hnnsolver.bsky.social
5 months ago
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HNN Textbook
The Jones comp neuro lab is at #SfN25! Come check out our talks and posters to learn about our latest & greatest Science with HNN! All poster presentation times & locations can be found at jonescompneurolab.github.io/textbook/res...
5 months ago
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Joyce Gao will present the application of HNN to simulate single pulse TMS evoked potentials. We show generative predictions for double pulse TMS and pharmacological modulations. Wed, Nov 19, 2025, 1 PM - 5 PM, PSTR478.08
5 months ago
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Excited to share our preprint on variability in patch leaving decisions! Check out the 🧵 below
5 months ago
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Contents of visual predictions oscillate at alpha frequencies
Predictions of future events have a major impact on how we process sensory signals. However, it remains unclear how the brain keeps predictions online in anticipation of future inputs. Here, we combin...
@dotproduct.bsky.social's first first author paper is finally out in @sfnjournals.bsky.social! Her findings show that content-specific predictions fluctuate with alpha frequencies, suggesting a more specific role for alpha oscillations than we may have thought. With @jhaarsma.bsky.social. 🧠🟦 🧠🤖
6 months ago
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And a huge thank you to my other co-authors: Kim Shapiro, Simon Hanslmayr, Jeremy Wolfe, Yali Pan, Aleksandra Pastuszak and of course @olejensen.bsky.social for bearing with me over the past many years!
7 months ago
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If you have followed my work more or less closely you may remember that there was a previous version of this paper that did not account for t-o-t. A huge thank you to @benjamingriffiths.bsky.social & @ajquinn.bsky.social who helped with the GLM and pulled me out of my confound misery.
7 months ago
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We hypothesized that high alpha power would be associated with reduced RIFT responses. However, we could not find a robust relationship between alpha power in the sensors showing the reaction time effect and RIFT. Maybe the effect is linked to holding the search template in VWM and not gain control?
7 months ago
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What's more, comparison of the reaction time and time-on-task regressors suggest that the peak frequency and sensors driving the relationship may be different. We argue that this suggests two generators of alpha - one associated with search and one with fatigue/boredom!
7 months ago
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We show that alpha power negatively correlates with RT - higher alpha, faster responses. There was no difference in hit rate between high and low alpha, so participants were indeed better at the task!
7 months ago
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At long last, the pre-print to our MEG study + RIFT study and the final paper from my Ph.D with @olejensen.bsky.social We show that strong pre-search alpha oscillations are associated with faster responses in visual search www.biorxiv.org/content/10.1...
@thechbh.bsky.social #neuroskyence
7 months ago
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Programme – MEG UKI
Hellohello again! Tomorrow at 5:15pm I’m giving a short talk on our latest MEG study about our very well-loved oscillating perceptual predictions @meguki2025.bsky.social. Come by and talk brains!
There are amazing talks and very cool science happening all around! MEGUKI 2025👌
9 months ago
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Huge thank you to my co-authors Kim Shapiro, Simon Hanslmayr, Jeremy Wolfe, Yali Pan, @benjamingriffiths.bsky.social and the best PhD supervisor @olejensen.bsky.social for bearing with me over the past many years. There will be a part 2 so stay tuned :)
10 months ago
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Finally out in @commsbio.nature.com !
Using MEG and Rapid Invisible Frequency Tagging (RIFT) in a classic visual search paradigm we show that neuronal excitability in V1 is modulated in line with a priority-map-based mechanism to boost targets and suppress distractors!
10 months ago
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In the physical world, almost all information is transmitted through traveling waves -- why should it be any different in your neural network?
Super excited to share recent work with the brilliant @mozesjacobs.bsky.social: "Traveling Waves Integrate Spatial Information Through Time"
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1 year ago
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Most amazing piece of science communication by one talented @kermieeart.bsky.social :)
1 year ago
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HNN Pre-Workshop Information
Workshop Overview
The Human Neocortical Neurosolver (HNN) is a user-friendly software tool for interpreting the cell and circuit level origin of human MEG and EEG signals.
In this virtual event, we ...
We invite you to join us at our 2025 Spring Online Human Neocortical Neurosolver (HNN) Workshop! This workshop will be on Wednesday, April 9th from 9 AM - 3 PM (ET). Find out more and sign up 👉 tinyurl.com/hnn-workshop....
Seats are limited! #compneuro
1 year ago
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If there is some science comm effort that tries to teach this I’d be happy to contribute. If not, I’d be happy to establish one! Potentially without a single host as the face of the show, but rather with many contributors. Would also reduce workload on the individual..
1 year ago
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