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Posts by Andrew Rambaut (🐏🎀)

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Fact-checking Matt Ridley’s “Scientific Freedom Lecture” at NIH (Part II) The first part of this rebuttal can be read here; the third part will be posted later. Ridley’s lecture is available on Youtube; I also generated a transcript, available here. The same disclaimer as i...

In March, invited by Jay Bhattacharya, Matt Ridley gave the inaugural "Scientific Freedom Lecture" at NIH, on a lab leak origin of COVID-19.

There was a lot to debunk; here is Part II:
pandemonium.hypotheses.org/1108

🧪 #covidorigin

1 week ago 51 20 2 3

I have been really impressed with @beaconbio.bsky.social, and find myself using it more and more. Excellent resource to replace ProMED.

6 days ago 10 4 0 0

There was literally a pangolin that flew combat sorties with the CIA in a dirty war in Laos that then died after drinking too much gin, so there’s at least one pangolin whose record is morally ambiguous

6 days ago 2082 429 47 85
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2 weeks ago 1 0 1 0

@ucuedinburgh.bsky.social @ucu.org.uk Sounds familiar?

3 weeks ago 3 1 0 0
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Draft report into ANU's controversial cuts critical of university's council ANU's council approved a massive $250 million cost-cutting program without clear evidence it was needed or achievable, according to an assessment in a draft audit office report.

Do you know a university cutting roles because 'urgent financial crises'?

Don't believe them: ANU made up their crisis & forced massive cuts for NO reason & with NO plan.

So many friends and colleagues suffered (& still do) because of this malice. Criminal.

www.abc.net.au/news/2026-03...

3 weeks ago 6 2 1 1
Screenshot of peartree with a tree and a root-to-tip plot

Screenshot of peartree with a tree and a root-to-tip plot

New feature for PearTree - root-to-tip plots. Web version at peartree.live | desktop apps to follow at github.com/artic-network/peartree/releases/latest

3 weeks ago 38 12 1 1

One of the best debunks of Ridley's theories was by 2018 Matt Ridley. He is now promoting what he mocked then: the creation in a lab, in secret, of a new human pathogen

web.archive.org/web/20190922...

#covidorigin

1 month ago 19 12 3 0
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Research Fellow (Postdoctoral) - School of Biosciences - 107071 - Grade 7 This post-doctoral position will contribute to both complementary programmes, developing ‘broadband’ metagenomic sequencing capabilities for rapid detection and characterisation of emerging and unknow...

ARTIC are hiring! Postdoctoral opportunity in metagenomics at the University of Birmingham

edzz.fa.em3.oraclecloud.com/hcmUI/Candid...

1 month ago 8 17 1 2
A screenshot of the new Pathoplexus homepage showing all viruses now supported, including Dengue and Yellow Fever, which are circled in red

A screenshot of the new Pathoplexus homepage showing all viruses now supported, including Dengue and Yellow Fever, which are circled in red

1/ 🦟 Big news: #Pathoplexus now supports Dengue virus & Yellow Fever virus - two arboviruses responsible for over 400 million infections and up to 94,000 deaths per year.
Here's what’s new in our latest update 👇🏻

Read the full update: pathoplexus.org/news/2026-03... 📰

1 month ago 45 22 1 0
EMF - Unbelievable (Official Music Video) HD
EMF - Unbelievable (Official Music Video) HD YouTube video by EMFtheband

I have just realised that 'Unbelievable' by EMF was a stark warning to the future about the use of LLMs by students to do their course work. www.youtube.com/watch?v=sfCL...

1 month ago 0 0 1 0

Second prize is two days.

1 month ago 1 0 0 0

Yes. It definitely wasn’t me that committed a broken build.

1 month ago 1 0 0 0
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Coincidentally, the newly minted icon...

1 month ago 5 0 1 0

Submit an issue at github.com/artic-networ... and provide an example and some background and I will look into it.

1 month ago 1 0 1 0
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I guess you mean you won't be using any programs where the developer tells you they used AI?

1 month ago 0 0 1 0

Post one as an issue and Claude and I will see what we can do: github.com/artic-networ...

1 month ago 1 0 0 0

Damn. Will rename it BearTree now.

1 month ago 6 1 0 0

Transit data? Where did it get that from?

1 month ago 1 0 1 0

I haven't even had time to design an icon.

1 month ago 0 0 1 0

For this sort of app – where bugs are apparent because you can see them and it is low-stakes because you are creating visualizations of scientific data rather than doing science – LLMs seem an extremely effective tool. PearTree was created in two weeks and I was doing other stuff at the same time.

1 month ago 10 0 2 0

This experience has been in interesting one - I think it helps that I know JavaScript quite well and feel I could have written this if I had had the time (with endless trips to StackOverflow). The code base is now large but generally easy to follow and well annotated.

1 month ago 2 0 1 0

Finally, I would like to be able to say this is the product of years of work but it certainly wasn't. I designed it, specified exactly how it should work, how the code should be structured and the frameworks to use but most of the actual code was generated by Claude Sonnet 4.6.

1 month ago 10 1 3 0
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artic-network/peartree Contribute to artic-network/peartree development by creating an account on GitHub.

But happy to have requests and bug reports through GitHub issues github.com/artic-networ... and it is all open source code etc. so PRs also welcome. Including new themes and palettes.

1 month ago 5 0 1 0
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artic-network/peartree Contribute to artic-network/peartree development by creating an account on GitHub.

There are features from FigTree that are missing some of which I plan to implement, some I am not (I am looking at you circular trees).

1 month ago 10 0 1 1
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IQ-TREE: Efficient phylogenomic software by maximum likelihood

It can also handle unrooted trees such as those produced by the lovely IQ-TREE (iqtree.github.io) including bootstrap values. And you can do various re-rooting operations on these 'unrooted' trees.

1 month ago 10 0 1 0
IQ-TREE: Efficient phylogenomic software by maximum likelihood

For obvious reasons it is quite orientated towards BEAST trees (i.e., MCC or HIPSTR trees with posterior summary information about the nodes). You can calibrate a timescale, draw node bars etc. Colour things based on annotations etc.

1 month ago 10 0 1 0

These should work like normal desktop apps (whatever is normal to your OS, at least) but I haven’t tested the Windows or Linux versions because I haven't.

1 month ago 9 0 1 0
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Releases · artic-network/peartree Contribute to artic-network/peartree development by creating an account on GitHub.

Whilst web apps are quite handy as they don’t need installing, they can be annoying (e.g., when you accidentally close the window). So you can also download desktop apps here: github.com/artic-networ...

1 month ago 24 4 2 1
PearTree Tutorial

There is a tutorial here if you want to take your time: artic-network.github.io/peartree/doc...

1 month ago 11 2 1 0