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Posts by Chris Miller

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Tax Day Could Be Easy. They’re Fighting To Make It Hard. The IRS already knows what you owe. Why are you drowning in paperwork every April?

🎧LEVER TIME: The secret 40-year plot to bury you in tax paperwork & force you to pay accountants - rather than letting the IRS send you your completed tax returns like other countries do.

This story is enraging - it's a GOP plot to enrich tax prep companies & make you hate taxes.

4 days ago 409 188 10 8

What about Computeral Bioinfology?

4 days ago 2 1 1 0
computational biology vs bioinformatics

With the heavy discounting on the first year of .bio domains right now, how can we not? It is decidedly not well-considered, but I will accept debate only in the form of a pull request

compbiovs.bio

5 days ago 7 4 2 0
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For the First Time in the U.S., Renewables Generate More Power Than Natural Gas

In a first last month, renewables supplied more power to the U.S. than natural gas, a milestone in the shift to clean energy.
e360.yale.edu/digest/us-re... via @yalee360.bsky.social

4 days ago 48 16 3 1

Delighted to share our latest research from the 23andMe Research Team, just published in @nature.com !
We looked at data from >27,000 participants to uncover how human genetics influences weight loss efficacy and side effects of GLP-1 medications like semaglutide. A short thread 🧵👇

1 week ago 86 33 1 4
A 'Dinosaur Smarties' Easter egg.

A 'Dinosaur Smarties' Easter egg.

Erm, they're called palaeontologists, actually.

1 week ago 7934 1814 55 45
Earthset captured through the Orion spacecraft window at 6:41 p.m. EDT, April 6, 2026, during the Artemis II crew’s flyby of the Moon. A muted blue Earth with bright white clouds sets behind the cratered lunar surface. The dark portion of Earth is experiencing nighttime. On Earth’s day side, swirling clouds are visible over the Australia and Oceania region.  In the foreground, Ohm crater has terraced edges and a flat floor interrupted by central peaks. Central peaks form in complex craters when the lunar surface, liquefied on impact, splashes upwards during the crater’s formation.
[alt text from NASA]

Earthset captured through the Orion spacecraft window at 6:41 p.m. EDT, April 6, 2026, during the Artemis II crew’s flyby of the Moon. A muted blue Earth with bright white clouds sets behind the cratered lunar surface. The dark portion of Earth is experiencing nighttime. On Earth’s day side, swirling clouds are visible over the Australia and Oceania region. In the foreground, Ohm crater has terraced edges and a flat floor interrupted by central peaks. Central peaks form in complex craters when the lunar surface, liquefied on impact, splashes upwards during the crater’s formation. [alt text from NASA]

#Artemis II lunar flyby images are showing up! 😍

A crescent Earth setting behind the Moon.

1 week ago 3820 888 35 73
Price of gas got you down? Heres how cheap it is to charge an EV right now. This map shows the cost of charging an EV by an amount equivalent to one gallon of gasoline. Figures reflect electricity prices as of January 2026. $1.24 $1.16 $1.32$1.09 $2.76 $1.16 $1.2631.16 $2.72 $1.48 $1.40 $1.32 $0.9851.35 $1.22 $1.641.75 $1.06 $1.15 $1.82.08 $1.$1.4658 $2:9318 $1.28 $1.06 ŞP43 $1.28 $1.1351.11 $1.18 $1.23 $1.39 $1.28.441.30 $1.41 $1.12 + $2.29 $1.43 $3.58 Puerto Rico $2.47 Vehicles used for the comparison are the 2025 gasoline-powered Hyundai Kona and the 2025 Hyundai Kona Electric. This analysis is based on home charging. Map: Karin Kirk for Yale Climate Connections • Source: Energy Information Administration and FuelEconomy.gov • Get the data • Embed • Download image • Created with Datawrapper

Price of gas got you down? Heres how cheap it is to charge an EV right now. This map shows the cost of charging an EV by an amount equivalent to one gallon of gasoline. Figures reflect electricity prices as of January 2026. $1.24 $1.16 $1.32$1.09 $2.76 $1.16 $1.2631.16 $2.72 $1.48 $1.40 $1.32 $0.9851.35 $1.22 $1.641.75 $1.06 $1.15 $1.82.08 $1.$1.4658 $2:9318 $1.28 $1.06 ŞP43 $1.28 $1.1351.11 $1.18 $1.23 $1.39 $1.28.441.30 $1.41 $1.12 + $2.29 $1.43 $3.58 Puerto Rico $2.47 Vehicles used for the comparison are the 2025 gasoline-powered Hyundai Kona and the 2025 Hyundai Kona Electric. This analysis is based on home charging. Map: Karin Kirk for Yale Climate Connections • Source: Energy Information Administration and FuelEconomy.gov • Get the data • Embed • Download image • Created with Datawrapper

This map shows the cost of charging an EV at home across the U.S. Home-charging is significantly cheaper in all 50 states than fueling a car with gasoline.

Source: @karinkirk.bsky.social @climateconnections.bsky.social yaleclimateconnections.org/2026/04/what... #energy #uspol

2 weeks ago 48 18 4 3

Few people are aware of how much progress has been made against cancers.

Leukemia is probably the most striking example.

Before the 1970s, most children affected by leukemia would soon die from it.

Now, most children in rich countries survive.
ourworldindata.org/childhood-le...

2 weeks ago 326 97 3 4

💯. Or just as bad: alpha-gal syndrome

2 weeks ago 0 0 1 0
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A series of buttons for different levels. The bottom level is labeled "Earth" and the top level is called "Space"

A series of buttons for different levels. The bottom level is labeled "Earth" and the top level is called "Space"

At Kennedy Space Center astronauts have to take elevators to the top of launch pad towers in order to enter their space capsules before lift off. This is the elevator panel at Pad 39A.

2 weeks ago 1864 493 18 56

My main gripe with the alphafold example is how it shows you need decades and decades of high quality data, well structured, open and accessible to train a model -- and yet they always gloss over it and pretend it's just AI and magic. No, we need to continuously invest in real data and FAIR data.

2 weeks ago 216 85 4 5

Ever receive a BAM aligned to “GRCh38” and realize that could mean several different references?

We just released ref-solver, a tool that identifies the reference genome behind BAM/CRAM/FASTA files by comparing sequence dictionaries to known builds.

🔗 whatsmygenome.fulcrumgenomics.com

Read more 👇

3 weeks ago 18 7 1 0

My impression is that scholar was someone's 10% project that was successful enough to keep, but not successful enough to devote any resources to

2 weeks ago 1 0 1 0
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Interesting looking study. Seems they are certainly aligned with the neutral-rebel/rebel-rebel #epigenetics camp by invoking chromatin accessibility and TF binding as an epigenetic memory 🤔 (image credit: @zchiang.bsky.social)

3 weeks ago 21 5 2 3

And 20kb reads are gonna be pretty tough in that setting. If it's perfect fresh cell-line DNA, this may be less of a problem!

3 weeks ago 0 0 1 0

What's your RNA quality? With ONT cDNA (poly-A selected), on real-world frozen tumor samples we see that as many as 50% of reads aren't full length - they have random truncations from RNA degradation. It works, but had to do all sorts of filtering and discarding to get to a reasonable dataset.

3 weeks ago 1 0 1 0

"Society should not be judged by how it treats it's most exceptional citizens, but by what percentage of its host star's energy it captures" -- Fyobro Dudeskyevsky

4 weeks ago 1571 60 31 2

💯 Renting a car for long road trips often ends up being a better deal anyway, once you factor in wear and tear on your car.

If you're a two-car family with a garage, there aren't many reasons left why you shouldn't get a cheap EV for your "around town" car.

4 weeks ago 1 0 1 0

Impressive - that's great production from a master's student!

Next lesson: figuring out which of those plots are actually the ones worth looking at 😄

1 month ago 3 0 1 0
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I want to make a simple argument: every new bioinformatics tool and method you write should be AI-ready. AI assistants need to work with your code, your outputs, and your analysis logic. Machine learning needs to train on the rich data your tools produce. If you’re not gathering this data as you go, you’re leaving value on the table.

I want to make a simple argument: every new bioinformatics tool and method you write should be AI-ready. AI assistants need to work with your code, your outputs, and your analysis logic. Machine learning needs to train on the rich data your tools produce. If you’re not gathering this data as you go, you’re leaving value on the table.

An argument from @nilshomer.com that in the long run, your tool's intermediate data may be just as important as the end results.
blog.fulcrumgenomics.com/p/your-bioin...

1 month ago 2 1 0 0

🚨 BREAKING: A federal judge has ruled in favor of @ameracadpeds.bsky.social and issued a preliminary injunction against the CDC.

The ruling pauses the Jan 2026 childhood immunization schedule revisions, blocks RFK Jr's 13 recent ACIP member appointments, and pauses all votes taken by the committee.

1 month ago 597 196 7 28
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A complete set of canonical nucleobases in the carbonaceous asteroid (162173) Ryugu - Nature Astronomy Samples returned from the asteroid Ryugu contain all five canonical nucleobases (A, G, C, T and U). Their presence in Ryugu and Bennu supports the hypothesis that carbonaceous asteroids contributed to the prebiotic chemical inventory of early Earth.

Samples returned from the asteroid Ryugu contain all five canonical nucleobases (A, G, C, T, U). Their presence in Ryugu and Bennu supports the hypothesis that carbonaceous asteroids contributed to the prebiotic chemical inventory of early Earth. http://dlvr.it/TRWtVp ☄️

1 month ago 147 77 2 11

Same.

1 month ago 2 0 0 0
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bedder-manuscript.v10 Bioinformatics, 2026, 0–0 doi: 10.1093/bioinformatics/xxxxx Advance Access Publication Date: DD Month YYYY Genome Analysis Genome Analysis bedder: flexible genome interval intersection with user-defi...

Brent Pedersen, Mitchell Vollger and I have "posted" our preprint of the manuscript describing bedder, a complement to the functionality of bedtools. The "preprint server" we have chosen is google docs because it was rejected by biorxiv.

docs.google.com/document/d/1...

1 month ago 41 18 7 2
Quantitative Biology

I've been through this before, and we decided to send our preprint to arxiv.org/archive/q-bio where it was posted rapidly

I kind of get why they made the rule (they don't want a new preprint for every version bump of every tool), but maintain that tools like this should have a place in bioRxiv

1 month ago 5 0 0 0

There is something darkly comical about vibe coding forcing a bunch of engineers who likely derided engineering management now managing a corral of AI agents that basically act like a mix between Amelia Bedelia and the guy from Memento

1 month ago 242 51 5 6
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Excited to share this preprint that describes my latest work on using GPUs to accelerate processing of RNA-seq data.

The title says it all: "RNA-seq analysis in seconds using GPUs" now on biorxiv www.biorxiv.org/content/10.6... and github github.com/pachterlab/k...

Figure 1 shows they key result

1 month ago 187 87 6 8
A line graph showing NSF grant awards made through 2/27/26 for fiscal year 2026 compared with grant awards for fiscal years 2021-2025.

A line graph showing NSF grant awards made through 2/27/26 for fiscal year 2026 compared with grant awards for fiscal years 2021-2025.

NSF Update (Awards through 2/27/26)

Directorates to follow

1/10

1 month ago 674 445 29 119
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Something is Going on with Colorectal Cancer An interactive data journalism piece exploring the rise of young-onset colorectal cancer, with population simulations, risk factors, and prevention information.

How Colorectal Cancer rates among young folks are 📈 and what we can do about it:
www.hankgreen.com/crc

To his excellent list, I'd add one more actionable item:

Advocate for cancer research funding. Cancer is not insurmountable - we've cured many types! We just need dollars and brains working on it

1 month ago 0 0 0 0