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Posts by Marc de Manuel

For an update on our preprint about the mysterious signature SBS5, see: www.biorxiv.org/content/10.1.... New analyses throughout, but see Figure 5 in particular.

1 day ago 40 16 1 1
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What sets the mutation rate of a cell type in an animal species? Germline mutation rates per generation are strikingly similar across animals, despite vast differences in life histories. Analogously, in at least one somatic cell type, mutation rates at the end of l...

Happy to highlight an essay I wrote together with @marcdemanuel.bsky.social,
@natanaels.bsky.social and Anastasia Stolyarova, trying to think through what sets the mutation rate of a cell type in an animal species: www.biorxiv.org/content/10.6... 1/n

3 months ago 124 63 2 1
Intro to Bedder – The Quinlan Lab

We are thrilled to announce the first official release (v0.1.8) of #𝗯𝗲𝗱𝗱𝗲𝗿, the successor to one of our flagship tool, #π—―π—²π—±π˜π—Όπ—Όπ—Ήπ˜€! Based on ideas we conceived of long ago (!), this was achieved thanks to the dedication of Brent Pedersen.

1/n

4 months ago 298 152 5 11
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🚨 15 days left to apply!
Be part of EvoMG-DN and advance your PhD career in evolutionary genomics.
πŸ‘‰ www.evomg-dn.eu

#PhD #DoctoralTraining #ResearchCareers #LifeSciences #BiomedicalResearch #Genomics #EvolutionaryBiology #MSCA #HorizonEurope #EUResearch #ResearchOpportunities #PhDPositions

5 months ago 8 9 0 1

Very happy to share our work on signature SBS5. See Molly's thread for a short summary

7 months ago 34 7 1 0
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Collateral mutagenesis funnels multiple sources of DNA damage into a ubiquitous mutational signature Mutations reflect the net effects of myriad types of damage, replication errors, and repair mechanisms, and thus are expected to differ across cell types with distinct exposures to mutagens, division ...

In these dark times, it comes as a rare pleasure to highlight @natanaels.bsky.social ‬ & @marcdemanuel.bsky.social's work on germline and somatic mutations in humans. 1/n
www.biorxiv.org/cgi/content/...

7 months ago 109 46 5 3

🚨🚨🚨

Please RT!

We're looking for a postdoc to join an exciting joint project between our lab @upf.edu & @crg.eu (Barcelona) and the Sander lab @mdc-berlin.bsky.social (Berlin) investigating how alternative splicing and microexons influences the maturation of pancreatic islets.

Deadline: 30/09/25πŸ‘‡

8 months ago 48 65 1 3
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I have an opportunity to hire a staff scientist for my lab. Looking for someone with outstanding skillset in ML/statistics, genomics applications; interest in mentoring, strong publication record, PD experience required.

Email CV to me+cc my assistant (see 'contact' on my website). Ad to follow.

10 months ago 83 108 3 3

Truly honored to be appointed an Ambassador for the ERC. Looking forward to keep advocating for the importance of frontier science in Spain, Europe, and beyond.

11 months ago 10 1 0 0
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πŸš€ We are proud to launch the new "Ambassadors for the ERC" initiative, together with @ercgrantees.bsky.social !

We aim to empower researchers across Europe to advocate for frontier research. Find out more πŸ‘‰ bit.ly/44bQzp7

🌟 Excited to see what can be achieved!

#Amb4ERC

11 months ago 52 18 1 9
2025 Human Genetics and Genomics Conference GRC The 2025 Gordon Research Conference on Human Genetics and Genomics will be held in Portland, Maine. Apply today to reserve your spot.

Posting on behalf of Shamil Sunyaev: Eimear(Vice Chair) and I (Chair) are organizing the 2025 Gordon Research Conference (GRC) on Human Genetics and Genomics, which will be held on July 6-11, 2025 in beautiful University of Southern Maine, Portland, Maine.

11 months ago 49 35 3 0
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πŸ”Š We're Hiring! πŸ”Š
The #IBE seeks a Post-award Research Project Manager - European Projects. 🌍

πŸ“„ Full-time | πŸ•’ 2-year renewable contract
πŸ“† Apply by: 4th May

Explore all our #JobOffers & #JoinOurTeam πŸ‘‰ https://www.ibe.upf-csic.es/work-with-us/job-offers

11 months ago 6 6 0 0
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It’s been a tough few weeks. My 10yo daughter was diagnosed with a very rare, aggressive cancer called interdigitating dendritic cell sarcoma (IDCS). I’m reaching out to identify clinicians/patients who have encountered pediatric IDCS or other (non-LCH) dendritic or histiocytic sarcomas cases.

1 year ago 1010 848 83 32
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The distribution of highly deleterious variants across human ancestry groups A major focus of human genetics is to map severe disease mutations. Increasingly that goal is understood as requiring huge numbers of people to be sequenced from every broadly-defined genetic ancestry...

β€œThe distribution of highly deleterious variants across human ancestry groups”. Preprint with Anastasia Stolyarova and @gcbias.bsky.social: www.biorxiv.org/content/10.1...

1 year ago 131 69 1 1
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Last days to apply!

1 year ago 3 3 0 0
Banner for job offers

Banner for job offers

πŸ“£ Two ERC-funded positions are available in the lab! If you are interested in exploring the mechanisms underlying mutation, we’d love to hear from you.

PhD: shorturl.at/Oc04N
Postdoc: shorturl.at/1ShHB

RPs and shares would be greatly appreciated!
πŸ§ͺ🧬πŸ–₯️ #ScienceJobs #PostdocJobs

1 year ago 46 44 0 1

Most of the talks from our Oct meeting are now online, with a few more to come: www.precisionmedicine.columbia.edu/videos

1 year ago 84 39 0 1
Banner for job offers

Banner for job offers

πŸ“£ Two ERC-funded positions are available in the lab! If you are interested in exploring the mechanisms underlying mutation, we’d love to hear from you.

PhD: shorturl.at/Oc04N
Postdoc: shorturl.at/1ShHB

RPs and shares would be greatly appreciated!
πŸ§ͺ🧬πŸ–₯️ #ScienceJobs #PostdocJobs

1 year ago 46 44 0 1
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PhD Fellowships - VHIO

πŸ“’ Are you interested in doing a PhD in Life Sciences #VHIO?

πŸŽ“ PhD call open: 8-10 fully funded scholarships for international Life Sciences & Medical students 🧬 🩺

Apply now πŸ‘‰ linke.to/PHDFellowshi...

πŸ—“ Deadline for applications: 29th November 2024

1 year ago 11 6 0 2
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In a new preprint led by @TheNikhilMilind, we explored a fascinating paradox:
For many traits the number of duplications or loss-of-function (LoF) mutations is correlated with phenotype. Curiously, for most traits, the AVERAGE direction of LoFs and Dups is the SAME. Why?

1 year ago 162 73 8 4
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Pls share 🌟Join the IMP as a Group Leader
We are πŸ‘€ for a colleague, ready to lead a groundbreaking research program. Enjoy generous funding, outstanding facilities & a vibrant scientific community in one of the world's most livable cities @impvienna.bsky.social
πŸ‘‰https://tinyurl.com/impgl2025

1 year ago 104 99 2 4
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Accepting postdoc applications to work on a broad range of topics including gene regulatory variation, response eQTL mapping, complex traits, comparative genomics in primates, and predictive models.

1 year ago 10 8 0 0

Here's a starter pack of people on here who I've found and who I know are excellent Science Communicators.
Give them a follow:
go.bsky.app/4SAvt2B

1 year ago 444 177 62 13

A thread with some new starter packs in genomics and bioinformatics 🧡 1/13...

1 year ago 123 55 8 9
Hibbins Lab

I'm recruiting students / postdocs to join my new lab at the University of Rochester for Fall 2025 onwards! If you're interested in phylogenetic comparative methods, genome evolution, and/or computational biology, please get in touch! More info:

mhibbins.github.io

1 year ago 48 57 0 2

Bioinformatics folks working on HPCsβ€”anyone got a go-to alternative to vscode? It’s become mysteriously slow and unresponsive on our system lately

1 year ago 0 0 1 0
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The new program of Evolutionary Medical Genomics, lead by @mirimiam.bsky.social, and shared between our Institute, CRG & UPF will hold its 1st symposium next week. Our work on unicellular relatives of animals and tumorigenesis will be represented by Yosuke.
Link: evomedgenomics.com/events/inaug...

1 year ago 11 7 1 1
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🧬🐭🐴🐻Job Alert🐻🐴🐭🧬

We are hiring 3 postdoctoral researchers in DeepTime Palaeogenomics!

All positions are for 2 years (extension possible), & are fully funded both in terms of employment and project costs.

Deadline: 2 Dec 2024

Please RT!

Apply:
www.su.se/english/abou...

1 year ago 73 72 1 4
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Conservation Genomics Faculty Position University of California, Los Angeles is hiring. Apply now!

Hi all! I'm excited to announce a tenure track faculty position in conservation genomics in EEB at UCLA! We're looking for candidates who use genomic tools to study evolutionary processes related to conservation. Note, the actual application deadline is Nov 29. recruit.apo.ucla.edu/JPF09875

1 year ago 86 99 0 2
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Genomics, evolution, and more starter pack!

Help build community with this starter pack.

This list is currently incomplete. Want to be included? Reply and I will remedy that!
go.bsky.app/JjvzkWU

1 year ago 351 167 224 10