I'm excited to announce we're recruiting a PhD student in Machine Learning for Immunology within the Einstein Center for Early Disease Interception, together with Simon Haas!

📧 Full details, incl on how to apply here buchauer-lab.eu/join/

📍 Start: March/April 2026 (some flexibility) | Location: Berlin (Charité Virchow Campus and MDC-BIMSB)

💡 We're looking for strong quantitative background (CS, physics, math, ML, bioinformatics), solid programming skills (Python/R), and machine learning experience.

🧬 You'll develop an "immune ecotype" framework that uses single-cell RNAseq data to build ML classifiers for early lung disease diagnosis. Build algorithms to integrate scRNA-seq data from >1,000 patients, engineer interpretable immune features, train ML classifiers for disease prediction.

I'm excited to announce we're recruiting a PhD student in Machine Learning for Immunology within the Einstein Center for Early Disease Interception, together with Simon Haas!

#ScientistSpotlight: This week we’re introducing Verena Körber, one of the newest Group Leaders at the MRC WIMM.

@rdm.ox.ac.uk @medsci.ox.ac.uk @ox.ac.uk

Thank you!

(looking for teaching projects for the coming semester ;-) )

Hi Lorenz, sounds very interesting, is the material available or could you share the outline?

TemporalVAE: atlas-assisted temporal mapping of time-series single-cell transcriptomes during embryogenesis Nature Cell Biology - Liu et al. present TemporalVAE, a method for integrating single-cell time course data. The model proposes a workflow to determine the biological timing of samples and its...

We care a lot about time. Now one of my best science friends, Melania Barile, et al. introduce TemporalVAE, a deep generative model that maps scRNA-seq data onto developmental time! It works with zero-shot & identifies time-sensitive genes @natcellbio.nature.com
🧪

Foto: Die Junge Akademie/Bernd Brundert Vier Fotos eines modularen Außenpavillons. Oben links: Innenraum aus beigem Holz mit zwei runden Fenstern, einem rosa Sitzkissen, freiliegenden Drähten und metallischen Luftschlangen. Oben rechts: eine durchsichtige Kuppel auf einem rosafarbenen runden Sockel. Unten links: silberne und rosafarbene geschwungene Außenansicht auf Kies unter Bäumen, ein Ende offen mit einem kurzen Vorhang. Unten rechts: Innenansicht mit einem runden Fenster, einer rosa Tafel mit Text und Luftschlangen.

Im November macht das #Utopiemobil erneut Halt im #Futurium in #Berlin. Am 13.11. geht es im Rahmen eines 🌟Open Lab Abends🌟ab 17 Uhr um die Zukunft der #Wissenschaftskommunikation. U.a. mit @leoniewenz.bsky.social und @libuchauer.bsky.social

Alle Infos:🔗 www.diejungeakademie.de/de/veranstal...

🔍 Wir suchen als Verstärkung eine Leitung für unsere Geschäftsstelle in #Berlin! 📍💼

✍️ Hier bewerben:
karriere.leopoldina.org/jobposting/e...

#Job #Stellenausschreibung #Stellenangebot #Organisationsentwicklung #Personalführung #Wissenschaftskommunikation #Wissenschaftsmanagement

Habe letztens das bekommen:

Few dates left to apply for this tenure-track professorship on Single-Cell Systems Biology in my department at @uni-wuerzburg.de. Competitive package and highly attractive research environment at the Institute of Systems Immunology.

Postdoctoral Fellow in computational modelling of NeuroImmune Mechanisms of Neurodegeneration (Open Targets) Your role As a Postdoctoral Fellow on the NeuroImmune Open Targets project, you will develop and apply integrative computational pipelines to dissect immune-cell phenotypes and cell–cell interactions ...

Postdoc position in our group at @ebi.embl.org about analyzing single cell data sets to better understand and treat neurodegen diseases, in collab with A Bassett, M Lotfollahi, @bayraktarlab.bsky.social, M Strauss and others within Open Targets. Deadline 20/07.

Please share

tinyurl.com/87wj466m

Scientific Database Curator – Fibrosis Transcriptomics We are seeking a technically skilled and biologically literate Scientific Database Curator to join a focused initiative on fibrosis research, hosted at EMBL-EBI in collaboration with the Saez-Rodrigue...

We have a curator position at @ebi.embl.org to work with GSK within a project to understand fibrotic processes (no PhD required). Deadline 20th July.

Please share 🙏

embl.wd103.myworkdayjobs.com/en-US/EMBL/j...

See the joint job posting for all consortium projects www.circadianmedicine.de, visit our lab website buchauer-lab.eu, and apply by August 8th.

#trr418 #circadianmedicine

We offer the opportunity to work part-time (0.75FTE or more). Please reach out to me with any questions. Prior experience with the Berlin computational ecosystem is considered a plus!

We are looking for independent, detail-oriented individuals that want to make a difference for the entire consortium by constructing high-quality data assets and innovative computational omics methods with a circadian twist.

We are currently recruiting a bioinformatics/computational biology postdoc to join the infrastructure project of a newly funded large research consortium (SFB-TRR) on Circadian Medicine between Charité - Universitätsmedizin Berlin and Universität zu Lübeck ⌚ ⏰ ⏱️ 🕰️ !

US to stop financial support of global vaccine alliance Gavi, health secretary says Health Secretary Robert F. Kennedy Jr said on Wednesday that the U.S. government will no longer contribute to Gavi, accusing the group that helps buy vaccines for the world's poorest children of ignoring safety, without providing evidence.

US terminates its support for @gavi.org the vaccine alliance that supplies life-saving vaccines the world’s poorest. Vaccines are among the safest, most effective prevention measures ever introduced. This is a disastrous and short-sighted decision!

the R is probably the biggest problem 😀 and then the hexagon, I think that is R visual language as well

decoupler has been very useful for us & helps you dive into meaningful sc analysis quickly!

small suggestion to increase uptake: consider changing the logo, at least two python users here initially immediately closed the tab as they thought is was an R package🙃

💡 Great science needs great environments. We are proud that our Single Cell Focus Area is among the ten “Best Research Environments 2024” – selected by @jungeakademie.bsky.social‬ together with the @volkswagenstiftung.de. Congratulations! 🥳

More details:
👉 www.diejungeakademie.de/en/press/bes... 👈

Honored that our lab made the shortlist for Best Research Environment. Awesome initiative by Junge Akademie and proud of the incredible Gaebler Lab team and the entire Infectious Disease Department at Charité/BIH that makes this place what it is! 👏 @libuchauer.bsky.social @sanderlab.bsky.social

@cgaebler.bsky.social well done :))

Das Gruppenfoto zeigt 45 Personen auf einer Holzterrasse vor einer Straße, Palmen und dem Meer. Bildrechte bei Ashley Sanders, MDC

🧬Unter den Top 24 der besten Forschungsumfelder ist auch die Single #Cell Focus Area. Sie vereint die Forschung der Charité Berlin, des @bihatcharite.bsky.social, des @mdc-bimsb.bsky.social und des @mdc-berlin.bsky.social. Der Preis wird im Juni ausgelost.
👉 www.diejungeakademie.de/de/projekte/...

also @lorenzadlung.com did you know that it's somehow thanks to you and your many activities that Roberta joined us? :-) many thanks!

Welcome Roberta, excited to have you with us & wishing you good luck!