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Posts by Dan Kliebenstein

A graphic with text that reads "ASPB Advocacy and Science Policy Update. Call to action: Support the NSF BIO Plant Biology Act. Strengthening U.S. Leadership in Plant Science."

A graphic with text that reads "ASPB Advocacy and Science Policy Update. Call to action: Support the NSF BIO Plant Biology Act. Strengthening U.S. Leadership in Plant Science."

The NSF BIO Plant Biology Act (H.R.7949) would strengthen investments in plant and microbial research—helping drive innovation and protect U.S. agriculture. Learn why it matters and how to take action 👉 buff.ly/xRu6Eqz #PlantScience #SciencePolicy

1 day ago 19 16 1 0
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The brothers get along. The little one is 10 months and the big one is six years.

2 days ago 8 0 0 0

In the argument about AI, fundamentals and enabling creativity in education, I keep thinking back to art museums.

What has always stunned me about impressionists and cubists is not how they created entirely new styles. It is their early works showing how phenomenal their fundamental skills were.

3 days ago 4 0 1 0
Postdoctoral Scholar position in the Coaker group
University of California, Davis
We are seeking a Postdoctoral Scholar to join our research program focused on immune receptor engineering and spatial analyses of plant pathogens interactions using computational and imaging approaches. The position will involve integration of molecular, imaging, and computational approaches. Relevant publications from the laboratory include Nature Plants (2025, PMID: 40721669), Proceedings of the National Academy of Sciences (2024, PMID: 38814867), and Cell Reports (2023, PMID: 37342910). https://www.coakerlab.org/
Qualifications:
•	Ph.D. in plant biology, molecular biology, genetics, computational biology, or a related field
•	Strong background in genomics and/or computational biology 
•	First author publications in peer-reviewed journals
•	Ability to work both independently and collaboratively in a multidisciplinary environment
•	Experience in plant innate immunity is preferred

Application Instructions:
The position is initially available for two years, with the possibility of extension based on performance and funding. Salary is based on the University of California postdoctoral salary scale (https://www.ucop.edu/academic-personnel-programs/_files/2025-26/represented-oct-2025-scales/t23.pdf). The salary range for this position is $69,073-$82,836 US Dollars/year. 
Review of applications will begin June 1, 2026 and will continue until the position is filled.
Please submit a CV, a brief statement of research interests (~1 page), and contact information for three references to glcoaker@ucdavis.edu. The research statement should describe your previous work, how your expertise aligns with ongoing research in the lab, and potential future research directions.

Postdoctoral Scholar position in the Coaker group University of California, Davis We are seeking a Postdoctoral Scholar to join our research program focused on immune receptor engineering and spatial analyses of plant pathogens interactions using computational and imaging approaches. The position will involve integration of molecular, imaging, and computational approaches. Relevant publications from the laboratory include Nature Plants (2025, PMID: 40721669), Proceedings of the National Academy of Sciences (2024, PMID: 38814867), and Cell Reports (2023, PMID: 37342910). https://www.coakerlab.org/ Qualifications: • Ph.D. in plant biology, molecular biology, genetics, computational biology, or a related field • Strong background in genomics and/or computational biology • First author publications in peer-reviewed journals • Ability to work both independently and collaboratively in a multidisciplinary environment • Experience in plant innate immunity is preferred Application Instructions: The position is initially available for two years, with the possibility of extension based on performance and funding. Salary is based on the University of California postdoctoral salary scale (https://www.ucop.edu/academic-personnel-programs/_files/2025-26/represented-oct-2025-scales/t23.pdf). The salary range for this position is $69,073-$82,836 US Dollars/year. Review of applications will begin June 1, 2026 and will continue until the position is filled. Please submit a CV, a brief statement of research interests (~1 page), and contact information for three references to glcoaker@ucdavis.edu. The research statement should describe your previous work, how your expertise aligns with ongoing research in the lab, and potential future research directions.

We are hiring! We’re excited to recruit a postdoc to our lab at UC Davis to work on plant immune engineering and single-cell analyses of plant pathogen interactions. Apply by June 1. Please repost. www.coakerlab.org/postdoctoral...

4 days ago 62 72 1 3

Gitta is an excellent scientist and mentor 🤩

4 days ago 11 6 0 1

In case you want to see the different views on the same question.

From the host's perspective
www.biorxiv.org/content/10.6...

From the pathogen's perspective
www.biorxiv.org/content/10.1...

From the interactive perspective
www.biorxiv.org/content/10.6...

4 days ago 5 2 0 0
Preview
a cartoon of snoopy dancing in front of a radio . ALT: a cartoon of snoopy dancing in front of a radio .

Three Botrytis/Eudicot papers accepted.

A reevaluation point on a question about generalism started with @katherinedenby.bsky.social 's sabbatical 24 years ago. Continued by a broad team of undergrads to post-docs including @annajomu.bsky.social @ccaseys.bsky.social and more not on bsky.

4 days ago 20 6 2 0

I have a feeling a lot of scientists need a intro genetics refresher.

4 days ago 9 0 0 0
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One can easily predict 75-90% of the genes for a known specialized metabolite pathway in a new species with just phylogeny and co-expression. No machine learning needed. And no synteny needed.

The problem is the edge cases of brand new genes that don’t coexpress. The Achilles of machine learning.

5 days ago 7 0 1 0

I wonder what would happen on those plants with Sclerotinia, Botrytis or Ralstonia.

5 days ago 2 0 0 0

the plant and animal domestication literature would have provided a good foundation to show the immensity of gene numbers altered by even faster selection.

6 days ago 1 0 1 0

Familiarity does that. Similar to feelings about corn and soybeans after 8 hours and 500 miles of drives across Illinois, Iowa and Nebraska.

6 days ago 1 0 0 0

Sometimes I think Pollan is simply bored with humanity and that shapes his interest in plants.

That quote equally works as "People are so familiar that it is difficult to fully appreciate our fellow humans, and our own, complexity and sophistication."

6 days ago 1 0 1 0

From personal experience, Plant genetic variation creates information knots that cause problems with compression approaches. I hope that I am wrong as a solution would be great.

1 week ago 2 1 0 0

I believe the question was about what happens when the SV diversity is several magnitudes of order more complex than a human genome. Complexity can be in numbers of genomes or craziness between any two genomes.

1 week ago 1 0 1 0
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Full version available now of our new pennycress paper at @newphyt.bsky.social - great working with @stairwaytokevin.bsky.social, @spicybotrytis.bsky.social, @jotlovell.bsky.social, et al. Come for the pretty pictures, stay for the cool science! nph.onlinelibrary.wiley.com/doi/epdf/10....

1 week ago 8 4 1 0

Probably how the protocol came back to the lab. Would have gone to Andrea for trial. Then through Alan, Tricia and Laurie.

1 week ago 1 0 0 0

Unfortunately was just starting PhD and didn't get out of Cornell for meetings for another year or two. Sounds like a fun one.

1 week ago 1 0 1 0

Was not Andrew. IIRC, was Herman Höfte representing the Versailles groups and it wasn't on the schedule at Arabidopsis 1993 in Columbus OH. The talk was given on an overhead projector via transparencies. Bechtold et al 1993 was the sea change. This meeting was off the hook . 1/n

1 week ago 2 1 1 0

If I remember right, Andrew shared the protocol widely at the Arabidopsis meeting the first time they got it to work. So a lot of labs were using it long before the paper was official.

1 week ago 2 0 1 0
Macrosynteny and genome structure across the Brassicaceae.

Macrosynteny and genome structure across the Brassicaceae.

Community resource: Structure and sequence evolution in the pennycress (Thlaspi arvense) pangenome

Bird, et al.

nph.onlinelibrary.wiley.com/doi/10.1111/...

#PlantScience

1 week ago 5 3 0 0

Could you tell if any of the sub-groups seem to be unique to the Brassicales? Keep looking for something unique to the Brassicales with cysteines or leucines that could be an isothiocyanate sensor.

1 week ago 0 0 0 0

Copyright is okay.

2 weeks ago 3 0 0 0
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I find that a truly remarkable or surprisingly is best matched with some explaining of the expectation and why the result seems remarkable or surprising. Letting the data speak for itself can lead the reader to forget the existing knowledge background. Especially in an era of AI reading.

2 weeks ago 2 0 1 0

That must be why I like those majors better. A super solid broad foundation with a spice of specialization. I feel like we don’t require that super solid foundation any more.

2 weeks ago 0 0 0 0

Definitely feels likes that. Hope to see if any other species end up being as crazy.

2 weeks ago 0 0 0 0

The liberal arts bio majors that I am familiar with are a bit of a problematic example. They were written specific but once one went into the actual courses, they were often broader than “broad” majors at large schools. A botany degree at St Olaf or Grinnell had broad training far beyond Botany.

2 weeks ago 0 0 1 0

It was a total delight to work with this team and be involved with this project! And we found such cool results!

2 weeks ago 4 2 0 0
Young colt eating watermelon rind.

Young colt eating watermelon rind.

No but they each have a 1.5 acre pasture so are not wanting. Not to mention carrots, watermelon and sweet corn scraps from garden.

2 weeks ago 1 0 0 0

Totally written for an audience that has never worked with young horses. The gelding author relies on an absence of specialist knowledge in the reader to push a biased narrative by exclusion of information.

2 weeks ago 1 0 1 0