Do you want to know when your favorite species activates its genome?
Just input its genome size (🧬 in bp) and egg volumen (🥚 in um3) here!
ZGA_onset = -2.37 * log10(gDNA/EggVol) + 11.74
The global wildlife trade—especially in illegal and live-animal markets—is fueling the spread of diseases from animals to humans, according to a new study in Science.
The findings show that traded mammals are more than 40% more likely to harbor human-infecting pathogens. https://scim.ag/41SZkSq
"You" can "now" "eat" "some fish" "caught" in "New York's Hudson River for the "first time" in 50 "years."
bye!
Nature-based solutions: beavers as carbon sinks #ClimateChange
My lab’s first publication is out now! MSc student Tia Attfield reviewed the current captive rearing literature in salmonids and provides perspectives on how epigenomics can help.
Huge thanks to all our co-authors for their expert insights!
onlinelibrary.wiley.com/doi/10.1111/...
Cancer mortality rates near nuclear power plants...
We're working through it right now. Pipelines aren't as well ironed as Hi-C it appears. Given the very large contigs we get from HiFiasm ONT-mode, scaffolding really doesn't have much heavy lifting to do.
Hello! Molecular Ecology is now on @bsky.app!
Follow us for updates about Molecular Ecology and Molecular Ecology Resources publications, as well as special issues, events, and awards!
onlinelibrary.wiley.com/journal/1365...
Just a few days left to submit the ASN student research award (due March 13th)!!!! This is an AWESOME opportunity for students to get some grant writing experience!!! We LOVE reading your grants and giving feedback!!!!!!!!!!! Apply, Apply, Apply!!!!!!
www.amnat.org/announcement...
Announcing the STRiVE network by ESEB to study structural genomic variation through research and seminars. Join us! Details: https://structuralvariantsstn.github.io Newsletter: https://groupes.renater.fr/sympa/subscribe/stnstrive #conference
Come join #LaurierBiology!
We're recruiting 3 tenure-track faculty positions!
Integrative Organismal Zoologist!
careers.wlu.ca/job/Waterloo...
Microbial Systems Biologist!
careers.wlu.ca/job/Waterloo...
Computational Ecology/Modeling Biologist!
careers.wlu.ca/job/Waterloo...
DEADLINE MARCH 22nd!
New round of NSF GRFP declines without review. If you were affected:
1) Write NSF
2) Write your Congressperson
3) CC us at grfp@grant-witness.us so we can compile + follow up
Details and template at grant-witness.us/grfp-letter
This is the link to the post: bsky.app/profile/noam...
+1 for PopTools - that thing was awesome!
Really crazy that these massive genes are 6% of the 1.5 Mbp genome in this bee gut symbiont:
Now on Bluesky - lead author Christopher Osborne! @congenomics.bsky.social
In a conservation context, need for “genetic rescue” is often evaluated solely at nucleotide level, but perhaps isn't necessary if SVs & pangenomic variation provide the needed “genetic diversity” for ecol success. Among-pop homogenization risk should be given more attention re. "rescue" in my view.
Slightly off topic, but informative re. inbreeding - we also identified the sex chromosomes in brown treesnake and demonstrate their evolutionary origins relative to other snakes, providing information on how sex chromosomes (can sometimes) degenerate over time.
Despite the apparent lack of genetic diversity at the nucleotide level, structural genomic variants (indels, inversions) rescue the pop from inbreeding. Structural variants were often TE-associated and genes affected by SVs were enriched for olfaction – a key feature of their ecol success on Guam.
Graph depicting a decline in effective population size following the introduction of brown treesnake to Guam around the 1950s.
Graphs depicting extensive, and long, runs of homozygosity across the brown treesnake genome.
We assembled a haplotype-resolved genome and found evidence of extensive inbreeding, decline in effective pop size, and extended runs of homozygosity in nucleotide sequence across the genome, as expected based on their invasion history.
Brown treesnake photo and karyogram of a haplotype phased genome assembly.
Biological invasions present an interesting paradox: often little genetic variation is accompanied by dramatic ecological success. Led by PhD student Chris Osborne, we evaluated genetic diversity in a classic invader, brown treesnake on Guam. www.biorxiv.org/content/10.6... Photo: Pavel Kirilliov
We're excited to be recruiting an NIH funded postdoc to work in the Coop lab at UC Davis. We're specifically interested in candidates who are want to work at the intersection of human genetics, GWAS, and population genetics modeling. Please RT
Uppsala in late autumn
Join us at the Evolutionary Biology Centre at Uppsala University. We’re searching for an Assistant Professor in Biology. www.uu.se/en/about-uu/...
I wrote today about AlphaGenome, Google DeepMind's AI for DNA. It's powerful, experts told me, but it won't solve the mysteries of the genome overnight. Gift link: nyti.ms/4k5NFIl
I’ve never been prouder to be a Minnesotan.
Someone beat me to it. You should meet Alec if you haven't - a great champion of long lived and underappreciated fishes (suckers!)
🚨 Job Alert! TT Assistant Professor of Marine Biology at the University of Alaska Fairbanks! Looking for a candidate with a focus on coastal ecology. Come be my colleague! Please share.
careers.alaska.edu/jobs/assista...
#Nanopore sequencing for ancient DNA -->
