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Posts by Human Neocortical Neurosolver

Biophysical modeling to develop and test mechanistic hypotheses underlying pharmacological EEG biomarkers.

Top: Modeling EEG biomarkers begins with picking a specific brain signal that is reliably different between patient populations. An example of a hypothetical EEG biomarker is an auditory event related potential (ERP) that is suppressed in post-treatment (red) relative to pre-treatment (blue). Middle: Biophysical modeling allows for testing mechanistic hypotheses that explain how EEG biomarkers emerge and change with drugs. Hypotheses about which drug mechanisms lead to distinct brain activity patterns must be constructed, and corresponding model parameters identified. Bottom: The default HNN model is used as a starting point to test hypotheses by either manually altering the values of the chosen model parameters, or using automated optimization and inference algorithms. Differences in parameter values pre-to post-treatment correspond to model-based predictions.

Biophysical modeling to develop and test mechanistic hypotheses underlying pharmacological EEG biomarkers. Top: Modeling EEG biomarkers begins with picking a specific brain signal that is reliably different between patient populations. An example of a hypothetical EEG biomarker is an auditory event related potential (ERP) that is suppressed in post-treatment (red) relative to pre-treatment (blue). Middle: Biophysical modeling allows for testing mechanistic hypotheses that explain how EEG biomarkers emerge and change with drugs. Hypotheses about which drug mechanisms lead to distinct brain activity patterns must be constructed, and corresponding model parameters identified. Bottom: The default HNN model is used as a starting point to test hypotheses by either manually altering the values of the chosen model parameters, or using automated optimization and inference algorithms. Differences in parameter values pre-to post-treatment correspond to model-based predictions.

Happy to share a new preprint from the @hnnsolver.bsky.social team!🧠💻🎉

"Uncovering putative neural mechanisms of neurotherapeutic impacts on EEG using the Human Neocortical Neurosolver"

📝 www.biorxiv.org/content/10.6...

3 days ago 21 11 1 0
Multipanel figure illustrating the key components of the paper: 1) biophysical reservoir computing where a network of biophysically detailed excitatory and inhibitory neurons are randomly connected, receive a brief input, and produce a sustained spiking pattern in response, 2) an illustration of the task the biophysical reservoir computer is trained on: a simplified working memory task where the network must produce distinct fixed point attractors in response to different inputs.

Multipanel figure illustrating the key components of the paper: 1) biophysical reservoir computing where a network of biophysically detailed excitatory and inhibitory neurons are randomly connected, receive a brief input, and produce a sustained spiking pattern in response, 2) an illustration of the task the biophysical reservoir computer is trained on: a simplified working memory task where the network must produce distinct fixed point attractors in response to different inputs.

Happy to share a new preprint from my PhD thesis! “A novel framework for expanding RNNs with biophysical detail to solve cognitive tasks” 🧠💻

📝 www.biorxiv.org/content/10.6...

@jonescompneurolab.bsky.social

1 month ago 56 18 1 0

🌟 New funding opportunity to collaborate with us! 🌟

Do you have a question about the neural origin of your human EEG or MEG data? We have a tool that can help, and there is a new NIH grant mechanism to support collaboration with our team.

Learn more and get in touch: forms.gle/tGfXE7ooszWS...

1 month ago 1 0 0 1

We are still accepting responses to this survey!

3 months ago 0 0 0 0
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HNN Dissemination Feedback This short survey aims to gather information on current community usage of the Human Neocortical Neurosolver (HNN) software. Please fill out this survey if you have heard of HNN, attended a workshop...

📣 Help us improve HNN features and educational resources for you! 📣

If you have heard about HNN, interacted with the software, or used it for a research project, we'd love to hear from you in this <5 min survey!
forms.gle/LB29PXMbEQak...

5 months ago 1 1 0 1
HNN Textbook

The Jones comp neuro lab is at #SfN25! Come check out our talks and posters to learn about our latest & greatest Science with HNN! All poster presentation times & locations can be found at jonescompneurolab.github.io/textbook/res...

5 months ago 8 4 1 0
Organizers: Amit Majumdar, Subhashini Sivagnanam                       San Diego Supercomputer Center, University of California San Diego

Join us on Nov 13th at the Neuroscience Gateway (NSG) online workshop! We will do a 30-minute introduction & demo of HNN features on NSG.

More details and registration: www.nsgportal.org/NSG_SFN2025_...

5 months ago 1 0 0 0
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Registration for Online attendance @PracticalMEEG Please fill in this form to : 1) Attend the lectures of PracticalMEEG 2025 remotely. These include the lectures of the main program (October 28-31st) the special AI keynote (October 30, at 5pm) the ...

We will be hosting an HNN workshop at #PracticalMEEG2025! Join us virtually on Oct 30th at 2pm CET (8 am EST) for a free hands-on workshop. Register here: docs.google.com/forms/d/e/1F...

6 months ago 6 0 0 2
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GitHub - Chetank99/GSoC_HNN: The end term report for my Google Summer Project that I did with HNN under the INCF organization. The end term report for my Google Summer Project that I did with HNN under the INCF organization. - Chetank99/GSoC_HNN

Chetan @chetan-kandpal.bsky.social is a Google Summer of Code superstar! Chetan worked on the difficult task of improving how different celltypes are used in HNN. Thank you Chetan, and @incforg.bsky.social as well for organizing the GSoC project! github.com/Chetank99/GS...

6 months ago 2 1 0 0
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GitHub - Myrausman/GSOC2025_INCF_HNN-Core: INCF GSoC 2025 – Python API for Multi-Network Simulations in HNN-Core: Extends HNN-Core to support simulations involving multiple interacting neocortical net... INCF GSoC 2025 – Python API for Multi-Network Simulations in HNN-Core: Extends HNN-Core to support simulations involving multiple interacting neocortical networks for enhanced modeling of brain reg...

Maira @myrausman.bsky.social is a Google Summer of Code superstar! Maira worked hard on the difficult task of building a foundation for simultaneous, multi-network simulations in HNN. Thank you Maira, and @incforg.bsky.social as well for organizing the GSoC project! github.com/Myrausman/GS...

6 months ago 1 0 0 0
Up Close: The Human Neocortical Neurosolver A transformative tool decodes electrical activity in the brain to reveal the behavior of neurons, opening new doors in research.

HNN was recently featured on the @carneyinstitute.bsky.social website and newsletter! Check out this article for the unique history and applications of HNN: carney.brown.edu/close-human-...

6 months ago 2 1 0 1
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SFN Presentations using HNN

SFN is around the corner again! If you are presenting on any HNN related projects at SFN, please share your presentation info with the community! #SfN25 #neurosky

forms.gle/Q8TDZgELXJyj...

7 months ago 1 0 0 0
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Want a high-level overview of how HNN works? Check out this short comic by our lab manager Joyce (@kermieeart.bsky.social)!

tinyurl.com/27xrksez

#compneuro #sciart #comics

1 year ago 18 6 0 1
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HNN Pre-Workshop Information Workshop Overview The Human Neocortical Neurosolver (HNN) is a user-friendly software tool for interpreting the cell and circuit level origin of human MEG and EEG signals. In this virtual event, we ...

We invite you to join us at our 2025 Spring Online Human Neocortical Neurosolver (HNN) Workshop! This workshop will be on Wednesday, April 9th from 9 AM - 3 PM (ET). Find out more and sign up 👉 tinyurl.com/hnn-workshop....
Seats are limited! #compneuro

1 year ago 5 4 0 1

We would also love to be added! The Human Neocortical Neurosolver is a Python API + GUI that can be used to develop and test hypothesis about the underlying mechanisms of EEG/MEG signals. Our mission is to make comp neuro accessible to anyone who wants to use it!

1 year ago 0 0 1 0

The Human Neocortical Neurosolver is on Bluesky! HNN is a user-friendly computational tool to develop & test hypotheses about the neural circuits underlying EEG/MEG signals. Our aim is to make comp neuro accessible to a broad community. Follow for HNN science, workshops & development! 🧠 👩‍🔬 #compneuro

1 year ago 10 3 1 0