VIAMD now supports reading DCD trajectory files.
You can load and analyze trajectories directly within VIAMD as with other formats by first dropping a pdb file followed by a dcd trajectory. Give it a try and let me know what you think! github.com/scanberg/via...
#VIAMD #MolecularDynamics #Compchem
You can now define some default coloring per element in VIAMD. On top of it, you can choose a specific atom-type coloring. Also works for @veloxchem.bsky.social files. #compchem
#compchem colleagues,
Want to learn about @veloxchem.bsky.social and @viamd.bsky.social?
Join us at The eChem workshop "Quantum Chemistry with Jupyter Notebooks", will take place in Marseille (France) from May 18th to May 22nd, 2026.
Information & registration:
echemarseille26.sciencesconf.org
Have a jiggly weekend! #compchem
#compchem You can use viamd to read and analyze @veloxchem.bsky.social output file. You can read more about it following this link: github.com/scanberg/via...
Very nice work! I saw that you are sharing gro file from your simulation in zenodo. Thank you for that. Would you be willing to also share trajectories. We are always trying to find cool and large trajectory to test our software.
You can now save Ultra HD (8k) resolution screenshot in VIAMD, with or without the GUI. Here illustrated on a visualization of a Moebius ring calculated with @veloxchem.bsky.social. #compchem
See you there. I'll be at the @veloxchem.bsky.social booth. Presenting our QM software as well as @viamd.bsky.social. #WATOC #compchem
Registration deadline June 15 approaching ....
Get inside a bacterial cell with this cool combination of @cg-martini.bsky.social and @viamd.bsky.social
Also check out our recent webinars on each:
🎬 Whole cell simulation with Martini ▶️ youtu.be/fvFaPgSoM90
🎬 Visual analysis of #moleculardynamics with VIAMD ▶️ youtu.be/wVENzcx0XmQ
MA(R/S)TINI 3: An Enhanced Coarse-Grained Force Field for Accurate Modeling of Cyclic Peptide Self-Assembly and Membrane Interactions | Journal of Chemical Theory and Computation pubs.acs.org/doi/full/10....
Interactive visualization of @cg-martini.bsky.social bacterial cell with @viamd.bsky.social. #compchem @gromacs.bsky.social
In addition to our website veloxchem.org, we are now opening the discussion on github, this is the place to exchange and ask questions about veloxchem (github.com/orgs/VeloxCh...). #compchem
Want to know more about Veloxchem and @viamd.bsky.social. Join us for a hands-on workshop and learn how to unlock the power of @lumi-supercomputer.eu for quantum chemistry using VeloxChem! Date and Place: May 26–27, 2025, CSC. Info and registration: csc.fi/en/training-... #compchem
New course available. Register today!
🔬 Into quantum chemistry + HPC?
Join the VeloxChem on LUMI Workshop — 26–27 May 2025 in Espoo, Finland!
💡 Learn to:
Run VeloxChem via Jupyter
Scale jobs on LUMI's GPUs with Slurm
Analyze results with VIAMD
Info + signup 👉 lumi-supercomputer.eu/events/velox...
lumi-supercomputer.eu/events/velox...
New feature! You can now visualize trajectories with bond formation and breaking by checking the Recalc Bonds option. #compchem
Learn how to create a dynamic selection and count its component in function of time: youtu.be/VhJyMkgYIkE?.... #compchem
Learn how to remap element and recenter a trajectory youtu.be/o7KxGW19Qjk?... #compchem
Learn how to calculate, plot and export spatial distribution function: youtu.be/BDYQEnrhlBQ?... #compchem
Learn about Properties, Selection, Import/Export and Workspace: youtu.be/0w8iPYEVeY8?... #compchem
Learn how to calculate properties and visualize them in the timeline and distribution window. youtu.be/7bqsg3GFly8?... #compchem
Learn how to load a trajectory and change representations: youtu.be/HlIss8Nhtoc?... #compchem
Hi #compchem people, there is a playlist of tutorial videos for VIAMD available here: www.youtube.com/playlist?lis.... The first one is just a quick overview of the software: youtu.be/7X4pMv1Hf-4?.... Following videos in the thread will describe specific features of VIAMD🧵
Hi #compchem people of Bluesky. Follow us for updates on our latest developments.
