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Posts by Daniel Hoces

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Open Call for 1 PhD Position at Università Vita-Salute San Raffaele in the frame of the MSCA Doctoral Network Multiple sclerosis (MS), is an autoimmune disease of the central nervous system (CNS), characterized by demyelination and neuronal loss, along with immune cell brain infiltration and inflammation.

🔬 We’re hiring again!

Looking for 1 #PhD student to join the #MSCA-DN TRANSCEND network 🧬

Project on unconventional #Tcells in #MultipleSclerosis with research exchanges in
🇩🇰 Klaus Eyer’s lab, Aarhus
🇳🇴 Victor Greiff’s lab, Oslo

⏳ Deadline: May 10

👉 euraxess.ec.europa.eu/jobs/403235

1 day ago 4 2 0 0
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Distinct components of mRNA vaccines cooperate to instruct efficient germinal center responses This study dissects the individual contributions of the different components of mRNA vaccines to immune responses. Nucleoside-modified mRNA promotes the production of type I interferons that act on de...

I am excited to share that our work, in which we have dissected the signals driven by the nucleoside-modified mRNA and LNP components of mRNA vaccines that regulate germinal center (GC) responses, is now published in Cell! www.cell.com/cell/fulltex...

4 months ago 47 19 5 4

Emma is an incredible mentor and scientist! Plus, Switzerland is a powerhouse of high-quality science. Don’t doubt to apply to this position.

5 months ago 1 0 0 0

1 week left to apply for a postdoc position in beautiful Switzerland doing awesome mucosal immunology. See below for details! Please re-post to spread the word!

5 months ago 6 5 0 2
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Botnar Institute of Immune Engineering - BIIE (Zürich): Doctoral studentships, Molecular Mucosal Immunology Group Botnar Institute of Immune Engineering - BIIE has a job opening for Doctoral studentships, Molecular Mucosal Immunology Group in Zürich (published: 29.10.2025). Apply now or check the other available...

We are hiring! 🧫 🧬 🚀

Three PhD studentships with start dates in 2026 available in the Molecular Mucosal Immunology lab at the Botnar Institute of Immune Engineering, Basel, Switzerland.

See here for details (Deadline: 7th November 2025):

join.com/companies/im...

5 months ago 10 12 0 0
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Introducing SLAE, our new framework to represent all-atom protein structures with residue local chemical environment tokens!
SLAE reasons over atomic interactions to recover structures and residue pairwise energetics, yielding a generalizable, physics-informed latent space. (1/8)

6 months ago 7 1 1 0

Excitability as a Design Principle in the Immune System www.biorxiv.org/content/10.1101/2025.08....

7 months ago 2 1 0 0

LCK deficiency in CD8 T cells leads to reduced proliferation and increased effector T-cell formation in mice www.biorxiv.org/content/10.1101/2025.08....

7 months ago 0 2 0 0
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Did you ever wonder what insights hide in the multiplets that are usually discarded in flow cytometry? 🫧 Find out in the first publication of my PhD, now out in Nature Methods! www.nature.com/articles/s41... (1/4)

8 months ago 36 17 3 0
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Our new review article led by Jordan Kramer:

Platforms for studying cell–cell recognition by immune cells

onlinelibrary.wiley.com/doi/10.1111/...

10 months ago 19 6 1 0

As promised, a 'skeet' -orial on our paper published last week !

1 year ago 28 9 1 0
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Continuous expression of TOX safeguards exhausted CD8 T cell epigenetic fate TOX safeguards exhaustion biology in established Tex cells and restrains fate conversion to Teff cells.

Excited to share my graduate work from the @ejohnwherry.bsky.social lab on the molecular mechanisms locking in the differentiation fate of exhausted CD8 T cells (Tex), published earlier this month in @science.org immunology. Main findings below!
www.science.org/doi/10.1126/...

1 year ago 52 7 13 1
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ICYMI by First release - now in print @science.org

Identification of APCs in the gut that promote Treg differentiation and how tolerance to food antigens is influenced by helminth infection.

buff.ly/3DjNQ1e

By @cicacanesso.bsky.social @danmucida.bsky.social @victora.bsky.social et al

1 year ago 58 17 2 1

Our paper is finally out in @immunolcellbiol.bsky.social, think that transcription factor expression is all that? Well not if the genome is not prepared in a way to allow binding: here is a short 🧵1/

1 year ago 18 4 1 0

1/ Ever wonder how a clearly brilliant person – someone great a math and engineering and company building – can display shockingly unintelligent thinking when it comes to politics? Neuroscience has the answer!

1 year ago 3 2 2 0

Two weeks left to apply for a postdoc position with the Slack group! Please spread the word!

1 year ago 22 24 1 0

Could you please add me to the pack? Thank you very much!

1 year ago 1 0 0 0
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Our new work!

The 3D affinities of the OT-I TCR to foreign and self-antigens predict their 2D affinities and reveal imperfect antigen discrimination

www.biorxiv.org/content/10.1...

1 year ago 17 4 1 1

Two studies published in @nature.com today showing that Tpex-like cells develop independent from acute or chronic infection

#Tpex

www.nature.com/articles/s41...

1 year ago 8 4 1 0
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Our work led by Anna Huhn is now published!
The molecular reach of antibodies crucially underpins their viral neutralisation capacity
lnkd.in/epe8YZPm

Thank you to the reviewers for constructive feedback!

1 year ago 8 4 1 1
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A timed epigenetic switch balances T and ILC lineage proportions in the thymus Highlighted Article: Delayed activation of the T-cell lineage commitment regulator Bcl11b in mouse thymic progenitors due to distal enhancer deletion reduces T-cell output and increases Zbtb16-driven ...

Happy New Year! Excited about our new study on a timed epigenetic switch controlling T cell and ILC lineage decisions in the thymus! In a nutshell: timing is everything.

The study was led by the fantastic @nickpease.bsky.social. A thread: (1/n)

doi.org/10.1242/dev....

1 year ago 23 10 1 0
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Thrilled to share our @sciimmunology.bsky.social paper! We report that rodent PD-1 is weaker than human PD-1 (reduced ligand binding & signaling) & lacks a conserved vertebrate motif. Humanizing mouse PD-1 disrupts T cell anti-tumor responses, raising many questions. science.org/doi/10.1126/...

1 year ago 38 16 2 1
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Prior antigen experience of CAR T cells determines functional attributes and amenability to transcription factor-mediated functional enhancement
www.nature.com/articles/s41...
@koledegolier.bsky.social
www.nature.com/articles/s41...

1 year ago 6 2 0 0
Simply Statistics: Biologists, stop putting UMAP plots in your papers UMAP is a powerful tool for exploratory data analysis, but without a clear understanding of how it works, it can easily lead to confusion and misinterpretation.

Biologist, stop putting UMAP plots in papers!

Blogpost here: simplystatistics.org/posts/2024-1...

1 year ago 241 68 20 16
JCI - Immunological and molecular features of the tumor microenvironment of long-term survivors of ovarian cancer

'The TME of Long Term Survival cases was distinguished by coinfiltration of T cells, B cells & plasma cells, along with upregulation of the PD-1/PD-L1 pathway. Remarkably, these prognostic associations were almost entirely restricted to tumors with high-epithelial content & the C4/DIF mol. subtype'

1 year ago 1 2 0 0
JCI - Delayed reinforcement of costimulation improves the efficacy of mRNA vaccines in mice

"(...) reinforcing 41BB costimulation on the day of vaccination did not result in a substantial improvement in vaccine responses. However, reinforcing 41BB costimulation on day 4 after vaccination, when 41BB expression levels were highest, resulted in a profound improvement in CD8+ T cell responses"

1 year ago 9 3 1 0
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🖐️ Hi Mam! - A superantigen (MAM) goes to the head of the class (II) to find alternatives to TCRs for specific peptide:MHC binders doi.org/10.1038/s415...

1 year ago 3 2 0 0
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This is a clever way to use synthetic biology: taking a toxin that overactivate the immune system (superantigen), rationally modify its core components and transform it into a platform of immunotherapy agents.
Congratulations to @haotiandu.bsky.social and @possuhuanglab.bsky.social on the 2 papers!

1 year ago 6 2 1 0
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1/ In two back-to-back papers, we present our de novo TRACeR platform for targeting MHC-I and MHC-II antigens

TRACeR for MHC-I: go.nature.com/4gcLzn5
TRACeR for MHC-II: go.nature.com/4gj5OQk

1 year ago 92 29 2 9
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Out this week @science.org by first release: Specific combinations of nutrients and metabolic enzymes determine T cell differentiation via loci-specific histone acetylations.

https://buff.ly/4gvqKTz

From Shixin Ma, Sue Kaech @tcellogic.bsky.social and colleagues

#Immunology #immunometabolism

1 year ago 31 5 1 2