Pipeline release! nf-core/demultiplex v1.7.1 - 1.7.1!

Please see the changelog: github.com/nf-core/demultiplex/rele...

Release Ampliseq Version 2.17.0 · nf-core/ampliseq nf-core/ampliseq version 2.17.0 - 2026-04-15 Summary of changes sample sheet standardization (legacy sample sheet still allowed) added Decontam for decontamination added ITSxRust alongside ITSx im...

Pipeline release! nf-core/ampliseq v2.17.0 - Ampliseq Version 2.17.0!

Please see the changelog: https://github.com/nf-core/ampliseq/releases/tag/2.17.0

Nextflow Training Week by @seqera.io is back on May 11-15, 2026!💻 It's bigger and better than ever, with beginners and advanced tracks! 🎓 Learn at your own pace with on-demand videos, live support from #Nextflow experts, and earn a certificate. hubs.la/Q04blYwg0

Pipeline release! nf-core/taxprofiler v2.0.0 - v2.0.0 - Crazy Corgi!

Please see the changelog: github.com/nf-core/taxprofiler/rele...

Release 1.0.0 - Excited Squid · nf-core/lsmquant Initial release of nf-core/lsmquant, created with the nf-core template. nf-core/lsmquant is a bioinformatics pipeline that performs preprocessing and analysis of light-sheet microscopy images of ti...

Pipeline release! nf-core/lsmquant v1.0.0 - 1.0.0 - Excited Squid!

Please see the changelog: https://github.com/nf-core/lsmquant/releases/tag/1.0.0

Release 1.0.0 - Excited Squid · nf-core/lsmquant Initial release of nf-core/lsmquant, created with the nf-core template. nf-core/lsmquant is a bioinformatics pipeline that performs preprocessing and analysis of light-sheet microscopy images of ti...

Pipeline release! nf-core/lsmquant v1.0.0 - 1.0.0 - Excited Squid!

Please see the changelog: https://github.com/nf-core/lsmquant/releases/tag/1.0.0

🧑‍💻 Final reminder of this hybrid(!) one-day #virus #bioinformatics hackathon coorganised with ourselves and the @nfdi4microbiota.bsky.social #VirJenDB project!

Deadline is end of this week to register your interested (April 17th)!

Work on one of the proposed projects, or propose your own!

Let's do it! 🤩

Got an idea? Submit your own project and lead a group. First time? Pair up with experienced contributors and dive in.

The nf-core Hackathon in Boston is happening in just over 2 weeks! 💻Join us April 28–29 for two days of collaborative hacking.🎟️ Register now: hubs.la/Q04brb4c0

Whether you want to add new features to existing pipelines, work on tooling, or tackle community initiatives — there's something for you.

New blog post! Introducing nf-core docs version 2
https://nf-co.re/blog/2026/docs-v2/

Release nf-core/rnaseq v3.24.0 - Selenium Seahorse · nf-core/rnaseq What's Changed fix: always set ID/SM read group tags; bump version to 3.24.0dev by @pinin4fjords in #1740 fix: always skip igenomes_base validation by @pinin4fjords in #1745 fix: update bowtie2 mo...

Pipeline release! nf-core/rnaseq v3.24.0 - nf-core/rnaseq v3.24.0 - Selenium Seahorse!

Please see the changelog: https://github.com/nf-core/rnaseq/releases/tag/3.24.0

Pipeline release! nf-core/variantprioritization v1.0.0 - 1.0.0 - Jane Addams!

Please see the changelog: github.com/nf-core/variantprioritiz...

New blog post! From pytest to nf-test: a journey toward native testing
https://nf-co.re/blog/2026/modules-pytest-conversion/

Pipeline release! nf-core/drop v1.0.0 - 1.0.0 - Red Dragon!

Please see the changelog: https://github.com/nf-core/drop/releases/tag/1.0.0

Release mag 5.4.2 - Yellow Frog patch · nf-core/mag Added #1006 - Add citations and references texts in the utils_nfcore_mag_pipeline subworkflow (by @dialvarezs) Changed #1000 - Update GUNC modules and enable the tool in tests (by @dialvarezs) #...

Pipeline release! nf-core/mag v5.4.2 - mag 5.4.2 - Yellow Frog patch!

Please see the changelog: https://github.com/nf-core/mag/releases/tag/5.4.2

👩🏼‍💻 Love #virus #bioinformatics ?

🤝 Enjoy collaborating with others?
📣 Register interest for the hybrid #VirJenDB
@nfdi4microbiota.bsky.social
#nfcore join us for a satellite hybrid #hackathon on 17th May!
🛠️ Contribute to or lead your own project!

📅 Deadline for project proposals: April 17th !

Release v1.1.1 - Azure Albatross · nf-core/viralmetagenome Added Template update for nf-core/tools v3.5.2 (#270) (by @Joon-Klaps) Modules update to latest nf-core versions (#271) (by @Joon-Klaps) Update local modules to use topics (#272) (by @Joon-Klaps) ...

Pipeline release! nf-core/viralmetagenome v1.1.1 - v1.1.1 - Azure Albatross!

Please see the changelog: github.com/nf-core/viralmetagenome/...

Release Montseny Brook Newt · nf-core/proteinfold [2.0.0] - 2026-03-27 Enhancements & fixes [#177] - Fix typo in some instances of model preset alphafold2_ptm. [PR #178] - Enable running multiple modes in parallel. [#179] - Produce an interactive...

Pipeline release! nf-core/proteinfold v2.0.0 - Montseny Brook Newt!

Please see the changelog: github.com/nf-core/proteinfold/rele...

Hackathon - April 2026 (Boston) An in-person hackathon held in Boston

The nf-core Hackathon is coming to Boston on Apr 28-29! 🎉

Collaborate with the community on projects ranging from adding new features to existing @nextflow.io pipelines to building entirely new ones.

Plus, network with fellow Nextflow developers at the hackathon social 🌎

hubs.la/Q048rnMs0

🧑‍💻 Need help with #nfcore #nextflow #bioinformatics pipelines, running or developing?

Please join the 🌍🌎 Eur/M.E./Afr/Americas weekly helpdesk.

Please join our nf-core core/infrastructure member Matthias Hörtenhuber, this Thursday at 14:30 CET | 08:30 ET on play.workadventu.re/@/nf-core/nf...

Release 4.1.0 · nf-core/rnafusion Added Added a BAM/CRAM conversion to FASTQ step to run tools that depend on FASTQ files. It still is advised to supply a FASTQ file if possible to reduce runtime of the pipeline. #783 Fixed Fix ...

Pipeline release! nf-core/rnafusion v4.1.0 - 4.1.0!

Please see the changelog: https://github.com/nf-core/rnafusion/releases/tag/4.1.0

We're thrilled to welcome 46 new Nextflow Ambassadors in 2026!🌍 This milestone brings our global community to a remarkable 143 ambassadors across 40 countries (our largest cohort ever).🎉 Here's to building the future of scientific workflows together! 🚀

Release nf-core/ribomsqc v1.0.0 · nf-core/ribomsqc nf-core/ribomsqc: Changelog The format is based on Keep a Changelog and this project adheres to Semantic Versioning. v1.0.0 - 2026-03-11 Added #27 - Added new quantification markers to XIC line pl...

Pipeline release! nf-core/ribomsqc vv1.0.0 - nf-core/ribomsqc v1.0.0!

Please see the changelog: https://github.com/nf-core/ribomsqc/releases/tag/v1.0.0

Pipeline release! nf-core/longraredisease v1.0.0 - Longraredisease 1.0.0 !

Please see the changelog: github.com/nf-core/longraredisease/...

Release mag 5.4.1 - Yellow Frog patch · nf-core/mag Changed #993 - Tweak test_full resources to stop failures (by @jfy133) #995 - Update CheckM and BUSCO modules (by @dialvarezs) Fixed #974 - Re-add accidently removed functionality for using meta...

Pipeline release! nf-core/mag v5.4.1 - mag 5.4.1 - Yellow Frog patch!

Please see the changelog: https://github.com/nf-core/mag/releases/tag/5.4.1

Pipeline release! nf-core/scnanoseq v1.2.2 - nf-core/scnanoseq v1.2.2 - Thallium Tiger!

Please see the changelog: https://github.com/nf-core/scnanoseq/releases/tag/1.2.2

Release nf-core/pixelator 3.0.1 · nf-core/pixelator [3.0.1] - 2026-03-09 Enhancements & fixes Fix Issue #191 by @Aratz in #192

Pipeline release! nf-core/pixelator v3.0.1 - nf-core/pixelator 3.0.1!

Please see the changelog: https://github.com/nf-core/pixelator/releases/tag/3.0.1

New blog post! Making nf-core/configs strict syntax compliant
https://nf-co.re/blog/2026/configs-strict-syntax/

Release nf-core/pixelator 3.0.0 · nf-core/pixelator [3.0.0] - 2026-02-23 Changed Set default pna_graph_component_size_min_threshold to 8000 instead of null (i.e. automatic) by @ptajvar #183. Removed Support for MPX in the pipeline by @johandahlbe...

Pipeline release! nf-core/pixelator v3.0.0 - nf-core/pixelator 3.0.0!

Please see the changelog: https://github.com/nf-core/pixelator/releases/tag/3.0.0