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Posts by Research Computing Teams

Docs Docs: Your new companion to collaborate on documents efficiently, intuitively, and securely.

This is absurdly great, but I haven't read a single news article about it. A fully open source, offline-first alternative to Notion that's a collab between the French and German governments because they want to host docs securely and on their own terms. THIS is what Europe should be doing.

1 year ago 509 176 23 22
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Estimated Single Year Loss of NIH Funding if 15% Indirect Cost Rate is Imposed Based on analysis of 2024 NIH funding data. Sums are totals of losses in funding to programs if indirect costs had been capped at 15%

Helpful table to determine how much your University or health system is set to lose if the NIH indirect cap is suddenly lowered to 15%. For SJSU it is $374k which is on the smaller end but devastating considering our other budget issues. datawrapper.dwcdn.net/l0ZqA/8/

1 year ago 211 129 14 37
discrete event simulation Discrete-event simulation is a useful technique for modeling the behavior of complex systems (like supercomputers and data centers) where events (and reactions to them) unfold ...

To share at least a little knowledge with the world, I documented the basics of discrete event simulation for reasoning about #HPC system design. The example I wrote shows how to calculate MTTDL for RAID arrays of differing sizes, parity disks, and drive MTBFs.

glennklockwood.com/garden/discr...

1 year ago 10 4 0 0
NOT-OD-25-068: Supplemental Guidance to the 2024 NIH Grants Policy Statement: Indirect Cost Rates NIH Funding Opportunities and Notices in the NIH Guide for Grants and Contracts: Supplemental Guidance to the 2024 NIH Grants Policy Statement: Indirect Cost Rates NOT-OD-25-068. OD

1. Today the NIH director issued a new directive slashing overhead rates to 15%.

I want to provide some context on what that means and why it matters.

grants.nih.gov/grants/guide...

1 year ago 7026 4101 256 901

Well the award for most cowardly, boot-lickingest academic society has squarely gone to the American Society of Microbiology, who has taken down features of various non-white scientists. Absolutely pathetic behavior. Those articles are now coming up as “under review”. Truly sickening cowardice here.

1 year ago 17791 4812 335 314

Petition for name change:

American Society for Microbiology

Vichy Society for Microbiology

1 year ago 7 2 0 0
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How do you ensure that your team is securely working with data?

1. Create policies that lay out how team members should access, work with, and store data.
2. Develop templates to be reused for common tasks.
3. Create style guides for naming/organizing things.
4. Store all of this in a team wiki.

1 year ago 25 8 2 0
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: #186 - 4 Jan 2025 Northwestern's experience with success stories. Plus: Standups; Lockwood on life in industry; Best forking practices; Energy debugging; Genomic data cybersecurity and privacy from NIST; and Slinky fo...

Latest issue is out: Northwestern's Christina Maimone on the team's experience with success stories. Plus: Standups; Lockwood on life in industry; Best forking practices; Energy debugging; NIST on Genomic data; and Slinky for slurm on k8s

www.researchcomputingteams.org/newsletter_i...

1 year ago 0 0 0 0
Hardening Modes — libc++ documentation

I hadn't heard of hardened libc++ before - libcxx.llvm.org/Hardening.html. Obviously, Google's code (lots of it being infra code) is different from scientific software, but it's still interesting. Anyone played with this?

1 year ago 1 0 0 0
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Retrofitting spatial safety to hundreds of millions of lines of C++ Posted by Alex Rebert and Max Shavrick, Security Foundations, and Kinuko Yasuda, Core Developer Attackers regularly exploit spatial mem...

Google enabled bounds checking for much of their C++ code with hardened libc++, and performance decreased by only 0.3% (while segfaults decreased by 30%): security.googleblog.com/2024/11/retr...

1 year ago 1 0 1 0
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: #179 - 21 Apr 2024 Success Stories are the best advocacy. Plus: Avoiding hero work pays off in the end; Good progress updates; Design is not recoverable from implementation; Product management at a science tech company...

And success stories are the best advocacy: www.researchcomputingteams.org/newsletter_i...

1 year ago 0 0 0 0
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: #182 - 2 June 2024 Scientific judgement is part of our job. Plus: Parking lots; Stop hiding in the comfort of your expertise; No wrong doors; Sales is research; Mentoring plans mandatory for NIH funding; NIHR RSS fundi...

Some other things I've written on this basic topic - scientific judgement is part of our job: www.researchcomputingteams.org/newsletter_i...

1 year ago 0 0 1 0

If a VPR or a funder has to decide between two similar centres, one can demonstrate opening up new research directions, good careers for trainees, and spinoffs, and the best the other can offer is 89% utilization or fully checked off worthiness lists, how do you think that decision is going to go?

1 year ago 0 0 1 0

Without us making the case for our work and our researcher client's work, how can those in charge possibly be fully informed for their next funding decision?

No one else is going to give them that information they need.

1 year ago 0 0 1 0

Advocating for the work we do means *qualitatively* showing decision makers how our work and our researcher client's work directly supports their priorities and missions. How the impact we're having is the impact they want to see.

1 year ago 0 0 1 0
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We owe it to our teams, we owe it to the researchers whose life's work we support, to powerfully advocate for the work we do.

1 year ago 0 0 1 0

So allocation of resources for supporting research is decided based on human research judgement. Yes, messy, flawed, biased, human research judgement.

1 year ago 0 0 1 0

There are too many diverse *kinds* of research and scholarship for them to be able to be compared against each other in any kind of quantitative or checklist-algorithmic way.

1 year ago 0 0 1 0

There are more useful, worthy things to spend research funding on then there is research funding. That would be true even if research funding doubled tomorrow.

1 year ago 0 0 1 0

How many units of "impact in qualitative social sciences" are there in one unit of "impact in quantitative computational biology"?

1 year ago 0 0 1 0

But *even if it was quantifiable*, research funders and institutional decision makers have to decide how to allocate scarce resources between incommensurate things. How many units of "reusable research software" equals one unit of "well-used HPC cluster" equals one unit of "hire more postdocs?"

1 year ago 0 0 1 0

The worthiness or impact of the work we support is basically unquantifiable in the short term. The work we do to *support* that work, doubly so.

1 year ago 0 0 1 0
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No one would actually *say* "Our work is demonstrably worthy - we've shown 85% utilization | 13 out of 14(!!) of the FAIR4RS principles met - so our work is done. If the funders don't fund us, it's on them". But...

1 year ago 0 0 1 0

In our line of work, one attraction of extrinsic, "objective" metrics like "utilization" for HPC or lists like FAIR4RS for research software is that we kind of hope that passively reporting good metrics will reduce the load of having to actively advocate for the work we do and the work we support.

1 year ago 0 0 1 0

Things I really like about this resource by @cghlewis.bsky.social

* Comprehensive but not overwhelming
* Includes (essential!) human elements: going over things with team members (03), and building SOPs (05)
* Think about data sharing early (04)
* Think about QA and tracking as next steps (10,11)

1 year ago 1 0 0 0

Great get-started guide, and another resource we can point PIs and groups to when they need to start thinking about data management.

1 year ago 2 0 1 0
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LA deputies dogged by New Year date glitch in patrol car PCs SoCal plod resort to paper logs after system that top brass was warned would 'inevitably fail' did exactly that Software on the computers in America's largest sheriff's department's patrol cars broke down on New Year's Eve due to a date-related…

LA deputies dogged by New Year date glitch in patrol car PCs

1 year ago 10 6 4 4

38 years ago my father gave me my first computer. Today I will travel back in time to stop him.

1 year ago 20092 1830 292 56
A TNG scene. We're in the Enterprise conference room, where Picard is holding a meeting with Data, Troi, and Dr Crusher. Barclay is also there, for unknown reasons. Maybe he wandered into the meeting and just sat down, and everyone was too polite to mention it. That happened to me once. I was visiting an office location I didn't normally go to and I wasn't quite sure which conference room I was supposed to be in. I walked into one and sat down and it took me five minutes to realize I was in the wrong meeting. From the perspective of the people in that room, halfway through that meeting, a stranger walked in, sat next to the boss, took notes for five minutes, then walked out without saying a word.

A TNG scene. We're in the Enterprise conference room, where Picard is holding a meeting with Data, Troi, and Dr Crusher. Barclay is also there, for unknown reasons. Maybe he wandered into the meeting and just sat down, and everyone was too polite to mention it. That happened to me once. I was visiting an office location I didn't normally go to and I wasn't quite sure which conference room I was supposed to be in. I walked into one and sat down and it took me five minutes to realize I was in the wrong meeting. From the perspective of the people in that room, halfway through that meeting, a stranger walked in, sat next to the boss, took notes for five minutes, then walked out without saying a word.

At its heart, Star Trek is a utopian fantasy about a society so advanced that they are capable of holding productive meetings that last no longer than three minutes

1 year ago 9982 2460 129 177