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Posts by Amit Chowdhry, MD, PhD

Causal Inference in Pharmaceutical Statistics The stated objective of this book is to educate the pharmaceutical statistician about causal inference. To this end, the author is very successful. Many in

Book Review: Causal Inference in Pharmaceutical Statistics. Yixin Fang. Chapman & Hall. 2024, 246 pp. doi.org/10.1093/jrss...

5 months ago 3 1 0 0
Bayesian Precision Medicine Bayesian statistical methods are in the process of revolutionizing clinical trials in oncology and all of medicine. This book, written by a world leader in

Book Review: Bayesian Precision Medicine. Peter F Thall. Chapman & Hall 2024, 330 pp. doi.org/10.1093/jrss...

5 months ago 4 1 0 0

Constant sens/spec assumption (see Dawid 1976, Moons and Harrell 2003, Guggenmoos 2000) + pre-test probability scores (eg Wells’) = Information Mismatch

Preprint: arxiv.org/pdf/2503.15382

1 year ago 1 1 0 0
The information mismatch, and how to fix it We live in unprecedented times in terms of our ability to use evidence to inform medical care. For example, we can perform data-driven post-test probability calculations. However, there is work to do....

Here’s our new preprint led by graduating URMC MSTP candidate @samweisenthal. There has been previously published work which shows that sensitivity and specificity are not independent of covariates.

doi.org/10.48550/arX...

1 year ago 1 2 2 0

@samweisenthal.bsky.social

1 year ago 0 0 0 0
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Principles of Biostatistics Principles of Biostatistics is a classic biostatistics textbook that I have enjoyed using to help teach students biostatistics previously, and I was excite

Pagano's Principles of Biostatistics does an excellent job with explaining conditional probabilities in an understandable way for clinicians

academic.oup.com/jrsssa/artic...

1 year ago 1 0 0 0

The easiest way to understand what assumptions are being made comes from understanding conditional probabilities.

1 year ago 1 0 1 0

Especially in this data-heavy era, we would argue that we should switch the way medical education teaches conditional probability – from calculating sensitivity and specificity using 2x2 tables to teaching conditional probabilities.

1 year ago 1 0 1 0
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In this paper, we describe an example of understanding this dependence on covariates matters.

1 year ago 1 0 1 0

Epidemiology courses traditionally taught for medical students typically assume that sensitivity and specificity are independent of patient factors and are true constants. In fact, this is not the case. The clinical consequences of this have not been discussed in detail.

1 year ago 1 0 1 0
The information mismatch, and how to fix it We live in unprecedented times in terms of our ability to use evidence to inform medical care. For example, we can perform data-driven post-test probability calculations. However, there is work to do....

Here’s our new preprint led by graduating URMC MSTP candidate @samweisenthal. There has been previously published work which shows that sensitivity and specificity are not independent of covariates.

doi.org/10.48550/arX...

1 year ago 1 2 2 0

Highly recommend this episode. One of their best

1 year ago 1 0 0 0

Having finally arrived at a time in my career with sci papers under review at big journals (many just collaborations but watching them submit & resubmit in ANNOYING portals made worse by AI QA) I think we should just publish in bioRX and journals should request the papers they want. #medsky #cansky

1 year ago 8 1 1 0

I don't like "machine learning 'builds on' statistics." A machine learning model *is* a statistic.

It's like building a range rover, saying it's a form of rovers, and that rovers "build on" cars.

"Builds on" is a political phrase to sell more range rovers.

1 year ago 2 1 1 0
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Was recently reminded of David Hand's alternative missing data taxonomy renaming the (in)famous taxonomy MCAR/MAR/MNAR by Donald Rubin to NDD/SDD/UDD. I am not generally a fan of renaming things, but this might be the exception

Source: rss.org.uk/training-eve...

1 year ago 76 19 6 4