I am SO THRILLED to share our first fully-lab lab paper!!!!!! Led by @hybridzones.bsky.social & @hagarsoliman.bsky.social, w/ a major assist from @pfschwarz.bsky.social!!!!!!!!!!!!! Read more below, if you're curious (you should be- it's AWESOME!!!!!!!)
link: www.sciencedirect.com/science/arti...
Posts by Pia Schwarz
Gestern hab ich bekannt gegeben, dass ich spätestens 2028 aus der Wissenschaft aussteigen werd — darüber schreibt @evamurasov.bsky.social nun im @tagesspiegel.de. Zig Kommentare & Nachrichten zeigen mir: Sehr viele Wissenschaftler_innen hadern. Bedingungen müssen dringend besser werden! #IchBinHanna
Brown treesnake photo and karyogram of a haplotype phased genome assembly.
Biological invasions present an interesting paradox: often little genetic variation is accompanied by dramatic ecological success. Led by PhD student Chris Osborne, we evaluated genetic diversity in a classic invader, brown treesnake on Guam. www.biorxiv.org/content/10.6... Photo: Pavel Kirilliov
@stressedbranch.bsky.social
We’re excited to share the Pan-genomes Doorstep Meeting @ #PEQG26! Join this 3-hour workshop on evolutionary applications of pangenomics, covering construction, analysis, phylogenetics, annotation & graph QC. Register separately or as an add-on to PEQG: genetics-gsa.org/peqg-2026/do...
This article is now published! academic.oup.com/nargab/artic...
We’ve added a few new analyses. First off, we show that, while gene presence absence variation (PAV) scales with evolutionary distance in both plants and animals, the base level and rate of accrual are both twice as high in plants.
Slim 5 can now simulate genomes with multiple chromosomes like autosomes, sex chromosomes, mitochondria and chloroplast dna academic.oup.com/mbe/article/...
We integrate #ddRAD, #lcWGS and #mtDNA datasets. lcWGS and ddRAD approaches yield similar overall results for population genetic structure; however the two approaches differ in estimates of the magnitude of population genetic differentiation.
We reveal complex population structure and a temporally stable mosaic of #hybridization across the contact zone. We identify both active and stable states of hybridization, supporting the hypothesis that niche partitioning by stream size helps maintain species identity.
This paper is my first first-author publication, and especially meaningful to me, as it began as my undergraduate honors thesis.
I am very excited to share our new paper with my amazing co-authors and mentors @dmacguig.bsky.social @fishgenomes.bsky.social @tjnear.bsky.social . We investigate a secondary contact zone in #darters. track.smtpsendmail.com/9032119/c?p=...
This paper is especially meaningful to me, as it began as my undergraduate honors thesis.
We integrate #ddRAD, #lcWGS and #mtDNA datasets. lcWGS and ddRAD approaches yield similar overall results for population genetic structure; however differ in estimates of the magnitude of population differentiation.
Revealing complex population structure and a temporally stable mosaic of #hybridization across the contact zone. We identify both active and stable states of hybridization, supporting the hypothesis that niche partitioning by stream size helps maintain species identity.
Go read our new pre-print!
At the same time, Dr. Megan Frayer was finding that these two species have a ✨sorted✨ history of gene flow, including introgression of a large chromosomal inversion that has been previously implicated in hybrid seed inviability
but here's where things get spicy: in her rotation project, Pia showed that the genetic basis of hybrid seed inviability is in fact SHARED between two such incidences involving two different (and phylogenetically distinct) species.
She followed up with super awesome embryo rescues to show that these incidences of hybrid seed inviability arise in the endosperm, & that hybrid seeds show parent-of-origin biased growth effects, following some predictions that hybrid seed inviability may be evolving via parental conflict
Then Hagar stepped up to the plate: she showed that RI follows a geographic rather than phylogenetic pattern: populations that are closer together have the same patterns of crossing. Importantly, these patterns TRANSCEND SPECIES BOUNDARIES, creating a complex landscape of hybrid seed inviability.
This is work that I first started as a postdoc: I was befuddled about why we saw hybrid seed inviability evolve so many dang times in such a short period of time in monkey flowers, so I started just doing a ton of crosses.... like truly an unhinged amount...
We're on a roll: Super proud of this paper lead by Dr. Megan Frayer & GS Hagar Soliman (with a major contrib from GS Pia Schwarz): Introgression and Parental Conflict Shape Repeated Occurrences of Postzygotic Isolation @hybridzones.bsky.social @hagarsoliman.bsky.social @pfschwarz.bsky.social
Very important paper and resource. Bryophyte genomes expanded by one order of magnitude. www.nature.com/articles/s41...
This was a HUGE effort, taking years of diligent work. Hongfei was a true leader, and I'm really proud of this cool piece. We'd love any feedback y'all might have. www.biorxiv.org/content/10.1...
Lots of cool data to dig into, but the big take homes: Phenotypic evo is repeatable, but the genetic bases of these traits is largely not. Of the QTL we do find in more than one cross, QTL with large effect sizes or those implicated in more than one trait tend to pop up in more than one cross!!!!
Late to the party, but I'm so excited about the first paper from our lab: ✨Unique genetic bases of repeated life-history divergence associated with high altitude adaptation in Mimulus perennials ✨
This work was led by the ABSOLUTE ROCKSTAR Hongfei Chen!
I hope to take a PhD student in the coming application cycle. Please reach out if you are interested in joining our lab in EEB at Yale, especially if interested in working on the natural history/ phylogenetics/ morphology/ population biology/ development/ genomics of siphonophores. dunnlab.org
New manuscript by graduate student @kmeaton.bsky.social. Along with UG students she found that Pinfish pops have similar max thermal tolerance despite experiencing different water temps. This can make southern pops more susceptible to #climatechange & #oceanwarming
www.biorxiv.org/content/10.1...
New paper on the timing and geological context of two co-evolving salmonid fish radiations (predator-prey system) driven by adaptation-to-depth in the Great Lakes: www.nature.com/articles/s42...
I had a great time presenting my undergraduate thesis at #Evolution2024 #Evol2024. Stay tuned for more, the manuscript is submitted!!!
In case you missed my talk at #Evolution2024 #Evol2024 on mosaic hybridization and secondary contact of three darter lineages with @fishgenomes.bsky.social, Tom Near and @dmacguig.bsky.social you can see it here (starting at 56:00)
youtu.be/H-vue8TJsrA?...