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Posts by Ubadah Sabbagh

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Morphological transformation of Chlamydomonas smithii grown in Marine Broth medium Marine Broth induces extreme morphological transformation in C. smithii: Cells shift from typical ellipsoid shape to amorphous forms with thin wisp-like appendages containing mitochondria, revealing u...

New pub from @ArcadiaScience 🧵 We found that C. smithii — a freshwater green alga — undergoes wild morphological transformations when grown on Marine Broth. Huge cells with mysterious wisp-like appendages. Here's what we saw. thestacks.org/publications... [1/9]

2 months ago 2 1 1 0

resolved thank you!

5 months ago 1 0 0 0

If anyone at #sfn25 near the poster floor has hand moisturizer that I could use I will name my second-born after you

5 months ago 5 0 1 0
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Big experiments are only big if they can fail Some reflections on Arena Bioworks' unexpected wind down as a fellow institutional experimentalist

We’ve been heads down @ArcadiaScience for a bit but the @arenabioworks news this week caused me to dump thoughts. hard things are hard; don’t be such a fucking hater. Reflections on parallels w our own institutional experiment here seemay.substack.com/p/big-experi...

5 months ago 11 6 3 1

Thanks for reading

5 months ago 1 0 0 0
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Beware giving this site your unpublished data Users noticed the website had fake testimonials and a domain name registered seemingly overnight.

Excellent post by the creator of the hoax FormatMyPaper.com.

"We’re a community of experts, terrified of a harmless prank site, yet seemingly unbothered by the multi-billion dollar publishing industry that actually takes our copyright, our labor, and our intellectual property every single day."

5 months ago 26 7 1 2

Scientists themselves determine what is valued within science. Yet we act as if beholden to external managers, bean-counters who confuse the production of papers with scientific progress.

We don't have to find better ways to navigate the prison of metrics-driven scientific assessment.

5 months ago 95 20 1 2
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What does a reaction like this reveal? It reveals a kind of learned helplessness. A mind so accustomed to the constraints of its environment that its first impulse is not to imagine a different world, but to seek a more efficient way of navigating its own prison.

What does a reaction like this reveal? It reveals a kind of learned helplessness. A mind so accustomed to the constraints of its environment that its first impulse is not to imagine a different world, but to seek a more efficient way of navigating its own prison.

Ubadah Sabbagh is referring to closed-access for-profit publishing here, but I keep thinking about how perfectly it describes the general push to incorporate large language models into the scientific workflow in the interest of higher "productivity".

ubadah.substack.com/p/beware-giv...

5 months ago 112 25 1 1
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Beware giving this site your unpublished data Users noticed the website had fake testimonials and a domain name registered seemingly overnight.

PSA: Many of you may have noticed a website floating around called formatmypaper(dot)com. People rightly noted something was fishy. I dig into what happened here:
open.substack.com/pub/ubadah/p...

5 months ago 32 23 1 2

woah seems serious

6 months ago 2 0 0 0

there's a complaint button

6 months ago 0 0 0 0

wow worked great for me

6 months ago 2 0 0 0
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FormatMyPaper - The End of Manuscript Formatting Paste your paper, choose your journal, and let our AI handle the tedious rest. Get back to the science.

Woah just discovered this
formatmypaper.com

6 months ago 6 3 0 1
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If you've been hearing a lot about "AI Scientists" and wondered how much is real, how much is hype, and what's possible, so have I. So I spent some time thinking about it and this came out.
open.substack.com/pub/ubadah/p...

6 months ago 1 3 0 0
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Careers | Arcadia Science Evolve with Arcadia.

see our open engineering, science, and ops roles here:
www.arcadiascience.com/careers

7 months ago 0 0 0 0
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excited about applying engineering + AI to frontier biology?

we’re building tools @arcadiascience.com to help scientists move faster and smarter, and we’re hiring software engineers and applied ML engineers to join us. if that’s you, apply and let's talk:

7 months ago 1 1 1 0
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This week, I continue my discussion with @ubadahsabbagh.com, Chief of Staff at Arcadia Science. We discuss his transition to industry, perspective on the state of academic research, and his visionary endeavors. www.podbean.com/eas/pb-3spkv...

11 months ago 1 1 0 0
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folks, we’re hiring for scientist roles
- lab tech
- protein designer
- molecular biologist
- project scientist

all onsite, all for creative people who believe in open science & wanna build cool shit. plus other stuff but that’s in the postings
jobs.lever.co/arcadiascience @arcadiascience.com

11 months ago 3 0 0 0
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Cross-trait learning with a canonical transformer tops custom attention in genotype-phenotype mapping –

>march 10 @arcadiascience.com announces new form of rapid publishing
>apr 18 team reads a preprint, finds it interesting
>9 work days later, team publishes results validating and extending model

this is how science should be. open, rapid, with the community
arcadia-science.github.io/2025-geno-ph...

11 months ago 6 2 1 0

And the artist, Audrey Bell! www.aebellillustration.com

11 months ago 4 2 0 0
Comparative phylogenomic analysis of chelicerates points to gene families associated with long-term suppression of host detection We investigated patterns of gene family evolution across ticks and other parasites. We used phylogenetic profiling and trait-association tests to identify gene families that may enable parasitic speci...

The pub @arcadiascience.com

research.arcadiascience.com/pub/result-c...

11 months ago 4 0 1 0
Graphical abstract depicting diverse types of ticks on a phylogenetic tree

Graphical abstract depicting diverse types of ticks on a phylogenetic tree

Not only do we do cool science but we have a badass illustrator for our pubs

11 months ago 38 7 2 2

wow okay tufts, surprising me

1 year ago 7 0 0 0
University Declaration for Rümeysa Öztürk University Declaration for Rümeysa ÖztürkApril 2, 2025Dear Tufts community,Please see below a declaration by Tufts University in support of a motion filed today by Rümeysa Öztürk’s legal team in Öztür...

This made me cry and it really should not have. It is a document of basic decency. Good for Tufts, may the other institutions grow a spine too.

www.tufts.edu/president/sp...

1 year ago 785 221 7 11
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popped over to make sure its still there

1 year ago 3 0 0 0

This message is for immigrants — everyone from naturalized citizens to the “undocumented”— you may decide to do some things differently and that’s ok, smart even. Be gentle to yourself & remember that fear is the authoritarian’s greatest weapon.

1 year ago 97 25 1 0

sorry it was raining while I read

1 year ago 1 0 0 0
The seeker after truth is not one who studies the writings of the ancients and, following his natural disposition, puts his trust in them, but rather the one who suspects his faith in them and questions what he gathers from them, the one who submits to argument and demonstration and not the sayings of human beings whose nature is fraught with all kinds of imperfection and deficiency. Thus the duty of the man who investigates the writings of scientists, if learning the truth is his goal, is to make himself an enemy of all that he reads, and, applying his mind to the core and margins of its content, attack it from every side. He should also suspect himself as he performs his critical examination of it, so that he may avoid falling into either prejudice or leniency.
Ibn al-Haytham

The seeker after truth is not one who studies the writings of the ancients and, following his natural disposition, puts his trust in them, but rather the one who suspects his faith in them and questions what he gathers from them, the one who submits to argument and demonstration and not the sayings of human beings whose nature is fraught with all kinds of imperfection and deficiency. Thus the duty of the man who investigates the writings of scientists, if learning the truth is his goal, is to make himself an enemy of all that he reads, and, applying his mind to the core and margins of its content, attack it from every side. He should also suspect himself as he performs his critical examination of it, so that he may avoid falling into either prejudice or leniency. Ibn al-Haytham

prudent reminder for scientists today, from a thousand years ago

1 year ago 3 1 1 0

my tl is once again flooded with dead palestinian children killed by israeli bombs we pay for

1 year ago 4 2 0 0

fast forward two months later, i spent 10 hours today with a group of bay area investors, tech entrepreneurs, creatives, academics, lawyers, and scientists planning projects to develop education and tech sectors in syria.

we’re cooking 💚

1 year ago 6 0 0 0