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Posts by Center for Systems Biology Dresden

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Heather Harrington is new 2026 SIAM Fellow Recognition for mathematicians for outstanding research and service to community

The Society for Industrial and Applied Mathematics (SIAM) announced their 2026 Class of SIAM Fellows. One of them is Heather Harrington @haharrington.bsky.social, director @mpi-cbg.de, Center for Systems Biology Dresden, and professor at @ox.ac.uk. Congratulations! 🥳 www.mpi-cbg.de/news-outreac...

2 weeks ago 10 2 0 0

Now #published @prxlife.bsky.social: a great Dresden collaboration on lumen mechanics with @chandraniva.bsky.social @markusmukenhirn.bsky.social, Alf Honigmann @biotec-tud.bsky.social @poldresden.bsky.social!

@mpipks.bsky.social @mpi-cbg.de @csbdresden.bsky.social

3 weeks ago 20 7 1 0
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New #preprint: "A mechanical bifurcation constrains the evolution of cell sheet folding in the family Volvocaceae"

arxiv.org/abs/2603.15171

The next chapter in the #Volvox saga: work done by Valens Tribet during his internship in my group.

@mpipks.bsky.social @mpi-cbg.de @csbdresden.bsky.social

1 month ago 30 11 2 0
Two-panel calibration plot (two benchmark dimer datasets) comparing predicted interchain contact-probability bins (x-axis) with the observed fraction of native interfacial contacts (y-axis). Points follow the diagonal, indicating close agreement between predicted probabilities and true interface-contact fractions.

Two-panel calibration plot (two benchmark dimer datasets) comparing predicted interchain contact-probability bins (x-axis) with the observed fraction of native interfacial contacts (y-axis). Points follow the diagonal, indicating close agreement between predicted probabilities and true interface-contact fractions.

My first manuscript in MPI colours! With @tothpetroczylab.bsky.social, we show that AlphaFold PAE-derived contact probabilities are well calibrated to the fraction of true interface contacts across experimentally determined protein dimers.

www.biorxiv.org/content/10.6...

1 month ago 24 10 1 2
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#proudPI moment: this afternoon, my first student, Maryam Setoudeh, successfully defended her #PhD thesis @tudresden.bsky.social.

Picture of happy student and inanely grinning PI provided by @zhaoshh.bsky.social.

@mpipks.bsky.social @mpi-cbg.de @csbdresden.bsky.social

1 month ago 20 5 1 0
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The Division of Biological Physics @mpipks.bsky.social seeks a Research Group Leader in #biophysics, #softmatter physics, or related areas. (Further particulars in the ad.)

Apply by the 3rd of April 2026 at pks.mpg.de/bprgl to join us in Dresden!

1 month ago 17 8 0 1
Spatially Informed Autoencoders for Interpretable Visual... We introduce spatially informed variational autoencoders (SI-VAE) as self-supervised deep-learning models that use stochastic point processes to predict spatial organization patterns from images....

Our work @tudresden.bsky.social @csbdresden.bsky.social @mpi-cbg.de @scadsai.bsky.social fuses representation learning with spatial statistics @iclr-conf.bsky.social enabling #AI for spatial localization patterns: openreview.net/forum?id=09Y...

1 month ago 8 4 0 0
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2026 marks the 25th Anniversary of @mpi-cbg.de in Dresden. We invite all Alumni to reconnect and celebrate 25 years of science together August 24-25. Sign up, if you would like to receive further updates, formal registration will follow: www.mpi-cbg.de/25th-anniver...

2 months ago 17 6 0 2
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Come and join our Discrete Laplacian workshop in Dresden, Germany 🙌!

With Karel Devriendt, Otto Sumray, and Giulio Zucal, we are organising the workshop in MPI-CBG, 22-25 Jun 2026.
Thanks to the support from Heather Harrington's group at CSBD, MPI!

Abstract ddl: 1 Mar 2026

More details follow 🧵

2 months ago 8 5 2 0
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Giulio from the group of Türkü Özlüm Çelik talks on mathematical structures during our current coffee chalk talk series @csbdresden.bsky.social @math-mpicbg.bsky.social to promote knowledge exchange between disciplines.

2 months ago 15 5 0 0

The spring call for the ELBE Postdoctoral Fellow Program is now open. We look forward to receiving your applications by March 13, 2026!
Further information can be found here:
www.csbdresden.de/join-us/jobs...

2 months ago 0 1 0 0
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Snowy day @mpi-cbg.de and @csbdresden.bsky.social. ❄️❄️❄️

3 months ago 37 3 0 1
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How does an elastic line buckle within a curved surface? The answer, by @zhaoshh.bsky.social and @lepuslapis.bsky.social @mpipks.bsky.social @mpi-cbg.de @csbdresden.bsky.social, has now been #published @physrevlett.bsky.social:

doi.org/10.1103/63py-ph5s

4 months ago 15 8 1 0
Protein plasticity and evolution: The research group of Agnes Toth-Petroczy at MPI-CBG
Protein plasticity and evolution: The research group of Agnes Toth-Petroczy at MPI-CBG YouTube video by MPI-CBG

Watch this video about the work of the research group of @agnestoth.bsky.social @mpi-cbg.de & @csbdresden.bsky.social. Agnes and her group work on protein plasticity and evolution. For her work, Agnes recently received the Schering Young Investigator Award 2025! youtu.be/lEpvGu3J63M?...

4 months ago 16 4 2 1
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Robust variable selection for spatial point processes observed with noise We propose a method for variable selection in the intensity function of spatial point processes that combines sparsity-promoting estimation with noise-robust model selection. As high-resolution spatia...

Modeling spatial point patterns from noisy, incomplete experimental data just got easier! Great work by @domsturm.bsky.social for sparse, noise-robust model inference of point processes 🤩 @tudresden.bsky.social @csbdresden.bsky.social @mpi-cbg.de Preprint out now: arxiv.org/abs/2510.25550

5 months ago 4 3 0 0
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Greeted this morning with the blackboard of math discussion— looks like algebra, topology and data— during tea yesterday @csbdresden.bsky.social @mpi-cbg.de

5 months ago 10 2 0 0
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With her research group, “Algebraic Topology and Networks in Biology,” Daniela Egas Santander joins @mpi-cbg.de and @csbdresden.bsky.social. Welcome, Daniela! 🎉 @math-mpicbg.bsky.social www.mpi-cbg.de/news-outreac...

5 months ago 16 2 0 1
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A new call for the ELBE Visiting faculty program is now open! No matter if you are junior or senior faculty, if you work on math/physics/computer science/ML applied to life sciences, you are welcome to submit an application to come and collaborate with the groups at CSBD! Deadline is November 30th.

6 months ago 7 5 0 0

Welcome to @mpi-cbg.de, @mpipks.bsky.social and @csbdresden.bsky.social, Fridtjof!

6 months ago 1 0 0 0
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TopoSPAM: Topology grounded Simulation Platform for morphogenesis and biological Active Matter We present a topology grounded, multiscale simulation platform for morphogenesis and biological active matter. Morphogenesis and biological active matter represent keystone problems in biology with ad...

🤩👍🏼💪🏼 Meet #TopoSPAM - a high-performance simulation platform for biological morphogenesis with a friendly Python interface. @tudresden.bsky.social @csbdresden.bsky.social @mpi-cbg.de. Solve both continuous and discrete active mechanics! Released today: arxiv.org/abs/2509.24905

6 months ago 18 6 1 0
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Two years today! Very grateful 🙏 @mpi-cbg.de @csbdresden.bsky.social @math-mpicbg.bsky.social

6 months ago 14 2 0 0
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New Perspectives on the Hidden World of Proteins  Schering Young Investigator Award 2025 goes to Agnes Toth-Petroczy

Schering Young Investigator Award 2025 by the Schering Stiftung for Agnes Toth-Petroczy @tothpetroczylab.bsky.social @mpi-cbg.de @csbdresden.bsky.social. She receives the award for her work on the evolution, diversity, and function of proteins. Congratulations! 🎉 www.mpi-cbg.de/news-outreac...

6 months ago 31 5 1 2

🤩🤩🤩Absolutely thrilled our work is featured in the Magazine of @maxplanck.de ! Big thanks to the writer and editor 🙏🙏🙏 Never saw our work described so well! Curious? @csbdresden.bsky.social @tudresden.bsky.social @mpi-cbg.de - PDF is freely available, article starts p.36: www.mpg.de/25430399/MPR...

6 months ago 6 1 0 0

Now #published @pnas.org: "A model for boundary-driven tissue morphogenesis", a great #biophysics #devbio collaboration led by @danielalber.bsky.social @zhaoshh.bsky.social:

doi.org/10.1073/pnas.2505160122

@mpipks.bsky.social @mpi-cbg.de @csbdresden.bsky.social @flatironinstitute.org

7 months ago 38 12 4 0
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🙏 Very honored to speak at #BuildingBridges2025 on #AI for #Biomedicine. What an amazing lineup of panelists 🤩🤩🤩 Politics and Science working together- Germany, Lithuania, Czech Republic, Poland - together for future #AI 👍🏼 @hzdr.bsky.social @csbdresden.bsky.social

7 months ago 3 1 0 0
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Another #preprint: "Elasticity and plasticity of epithelial gap closure", from the #PhD work of Maryam Setoudeh:

arxiv.org/abs/2509.05110

This one required a lot of (I think) beautiful #mechanics!

@mpipks.bsky.social @mpi-cbg.de @csbdresden.bsky.social

7 months ago 35 8 1 3

Cool paper out by mathematicians studying population dynamics with algebraic geometry @georgysch.bsky.social @mpi-cbg.de @csbdresden.bsky.social @math-mpicbg.bsky.social

7 months ago 24 4 1 0
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Strata of Ecological Coexistence via Grassmannians We study the Lotka--Volterra system from the perspective of computational algebraic geometry, focusing on equilibria that are both feasible and stable. These conditions stratifies the parameter space ...

New #preprint: "Strata of Ecological Coexistence via Grassmannians" with Türkü Özlüm Çelik, Georgy Scholten, Kexin Wang, Giulio Zucal - a great, first collaboration with #mathematics @csbdresden.bsky.social @math-mpicbg.bsky.social:

arxiv.org/abs/2509.00165

@mpi-cbg.de @mpipks.bsky.social

7 months ago 12 5 1 0
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#GenAI meets perception psychology for better super-resolution microscopy 🤩 Fig.1 says it all! 😎 Fantastic collaboration with @casusscience.bsky.social - work of @zuseschoolsecai.bsky.social students @csbdresden.bsky.social - out now onlinelibrary.wiley.com/doi/10.1002/...

8 months ago 4 2 0 0
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Morphogen gradients are regulated by porous media characteristics of the developing tissue Summary: Image-based 3D modeling of pore-scale extracellular space geometries of the developing zebrafish embryo reveals that the Fgf8a morphogen gradient is regulated by the porous media characterist...

⚡️Advanced Computing ❤️ laboratory experiments ➡️ an unbeatable combination to unlock the secrets of biology! Together with the Brand lab @tudresden.bsky.social we @csbdresden.bsky.social discovered a simple mechanism how tissue geometry controls growth: journals.biologists.com/dev/article/...

9 months ago 19 7 2 2