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Posts by Lilly Cummins

Two people discussing scientific posters at the Microbiology Society Early Career Summer Conference 2025.

Two people discussing scientific posters at the Microbiology Society Early Career Summer Conference 2025.

Registration is open for our Early Career Summer Conference 🤝👩‍🔬

Join us on 6–7 July 2026 at the University of Birmingham for chance to network with peers and experienced colleagues in various fields of Microbiology, secure your place today: https://microb.io/ECConf26

#ECConf26

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3rd Microbial Evolution Network Ireland meeting 2026 Microbial Evolution Network Ireland meeting, at Trinity College Dublin

Just over two weeks left to register for MENI 2026! A !!free!! microbial evolution meeting in Ireland with some fantastic keynote speakers @jpjhall.bsky.social @rachelmwheatley.bsky.social @drrebeccajhall.bsky.social @tweethinking.bsky.social #Evolution #microbes

www.eventbrite.com/e/3rd-microb...

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2 days left ‼️
Don't forget to submit your abstract to MEEHubs2026: Aug 3-5, 2026

meehubs.org

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First slide of Francis Gyapong's (3rd year PhD student) talk on culturing the stickleback microbiome.

First slide of Francis Gyapong's (3rd year PhD student) talk on culturing the stickleback microbiome.

First slide of Mel Lawson's (PDRA) talk on using a Drosophila model of pathogen-microbe interactions.

First slide of Mel Lawson's (PDRA) talk on using a Drosophila model of pathogen-microbe interactions.

First slide of Michelle Hardman's (PDRA) talk on microbe-microbe interactions.

First slide of Michelle Hardman's (PDRA) talk on microbe-microbe interactions.

The Whelan lab is well represented at #microbio26 today!

@fgyapong.bsky.social culturing the 🐟 microbiome (10:45 Microbiome f.& B182)

@melissalawson.bsky.social a 🪰 model pathogen-microbe int. (14:30 Infection f.)

@michelle-micro.bsky.social on microbe-microbe int. (15:00 Und. Microbe Function f)

6 days ago 21 8 0 0
A screenshot from the conference app sharing the title, abstract and location for my talk at 10:45-11:00 in Hall 2A

A screenshot from the conference app sharing the title, abstract and location for my talk at 10:45-11:00 in Hall 2A

Really looking forward to today’s pangenomics session at #MicroBio26 !
I’ll be speaking at 10:45 to discuss how a successful pathogen can alter the evolution of an entire species pangenome 🦠

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LinkedIn This link will take you to a page that’s not on LinkedIn

🔊 Looking for a Research Assistant in Bacterial Evolution to join my lab 🦠
🥼Main duties: Research (AMR + microbiome) + lab assistance.
⏲️ Post duration: 30 months
🗓️ Closing date for applications: 20th April 2026
💰 Salary: ~£35k

Details and how to apply: tinyurl.com/2a3v66y7

Please share!

3 weeks ago 24 47 0 0
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Lineage dynamics of invasive Escherichia coli isolates in the Netherlands from 1975 to 2021: a retrospective longitudinal genomic analysis Escherichia coli is a common cause of invasive infections such as bloodstream and cerebrospinal fluid infections in neonates. Strains positive for the…

Am stoked and thrilled that our latest paper is now out. A longitudinal study of invasive E. coli from children in the Netherlands over 50 years

www.sciencedirect.com/science/arti...

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Research Associate in Microbial Genomics:Manchester This postdoctoral research position is part of a Cystic Fibrosis Canada Early Career Investigator Award funded for 3-years led by Dr. Fabrice Jean-Pierre and Dr. Fiona Whelan. The aim of this project is to identify the genetic changes that arise in the Pseudomonas aeruginosa genome following perturbations – such as antibiotic treatment – in an in vitro system. The PDRA will use a large dataset of P. aeruginosa genomes and experimental metadata to predict key mutationsto the organism.

📣 The Whelan lab is hiring a bioinformatics postdoc 📣

Together with @fabricejpierre.bsky.social, we are offering a 1-year bioinformatic PDRA position in comparative genomics of Pseudomonas aeruginosa. To find out more please visit whelanlab.co.uk/contact/. Applications close 3 April 2026!

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Epistasis and co-adaptation in bacterial genome evolution Nature Reviews Genetics, Published online: 02 March 2026; doi:10.1038/s41576-026-00941-7Bacterial genome evolution is shaped by epistasis, which can constrain or promote specific evolutionary paths. The authors review how integrating the effects of epistatic interactions into population-scale analyses can improve genotype–phenotype mapping and provide a deeper understanding of the complex traits that shape the microbial world.

ICYMI: New online! Epistasis and co-adaptation in bacterial genome evolution

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Epistasis and co-adaptation in bacterial genome evolution Nature Reviews Genetics, Published online: 02 March 2026; doi:10.1038/s41576-026-00941-7Bacterial genome evolution is shaped by epistasis, which can constrain or promote specific evolutionary paths. The authors review how integrating the effects of epistatic interactions into population-scale analyses can improve genotype–phenotype mapping and provide a deeper understanding of the complex traits that shape the microbial world.

New online! Epistasis and co-adaptation in bacterial genome evolution

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It was a pleasure to write this with input from PhD students @evehallett.bsky.social and Priyanshu from the @sheppardlab.bsky.social

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Epistasis and co-adaptation in bacterial genome evolution Nature Reviews Genetics - Bacterial genome evolution is shaped by epistasis, which can constrain or promote specific evolutionary paths. The authors review how integrating the effects of epistatic...

I’ve spent a lot of time over the past two years thinking about genome evolution and how recent research revealing complex gene-gene interactions has complicated traditional ‘gene-centric’ genomic approaches to evolution. So here is a review that consolidates these thoughts!

rdcu.be/e6pHY

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Are you, or do you know, a masters/undergrad looking to take part in a cool research project in bird behaviour, in a lovely field site? Look no further! 👇
(pls share!)

2 months ago 3 6 0 0
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MENI is back! Join us in Dublin this August 2026 for our 3rd Meeting for Microbial Evolution in Ireland. We are delighted to have @rachelmwheatley.bsky.social @drrebeccajhall.bsky.social @jpjhall.bsky.social and @tweethinking.bsky.social join us as keynote speakers this year. miniurl.com/MENI

2 months ago 42 32 2 2

I am delighted to share our pre-print on a LIN code system for C. jejuni and C. coli 🎊

2 months ago 6 3 0 0

A great initiative supporting women in microbiology! #microsky

2 months ago 3 1 0 0
Job profile

🔊 Job Opportunity: Postdoctoral Research Fellow in Bacterial Evolution.

Looking to recruit a postdoc to join a UKRI FLF-funded project on antibiotic resistance evolution in the microbiome 🦠

3 years funding, deadline 26th Jan, please share!
hrwebapp.qub.ac.uk/tlive_webrec...

3 months ago 40 54 0 1
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Annual Conference 2026 Industry opportunities

Microbial pangenomics is reshaping our understanding of microbial diversity. Reaching new frontiers of an open and evolving discipline, hear the latest insights at Annual Conference 2026. Registration is open: microb.io/AC26Register #Microbio26

3 months ago 4 5 0 0

The first preprint from @izziepotterill.bsky.social PhD. A clone within ST131 clade C with a totally unique capsule region.

4 months ago 12 9 0 0
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We're pleased to announce the annual IOI Early Career Researcher Conference will be held on 20 March 2026 at Saïd Business School, Oxford.

A conference for early career researchers, designed by early career researchers.

Register for your free place now:
www.ineosoxford.ox.ac.uk/event/ioi-ea...

4 months ago 3 2 0 0
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The ContamCalendar 2026 will likely be the final calendar we make, so we wanted it to be a great one.

The new design folds out to be A3, perfect for displaying the beautiful microbes inside 😍

Also full of microbe-related days throughout the year 📆🦠🧫🍄

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💥CONTAM CALENDAR GIVEAWAY💥

Here's your chance to win a ContamCalendar 2026! 🗓️🍄🦠

Just follow @contamclub.bsky.social and repost this post to enter the competition

Winner will be randomly selected from Bluesky or Twitter on Wednesday @ 6pm UTC

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‼️🚨🗓️ CONTAMCALENDAR 2026 🗓️🚨‼️

Excited to say the ContamCalendar is back for its fifth edition! We’ve created a fresh new design, folding out for an A3 monthly spread. It’s our best yet, we hope you’ll love it 🗓️🦠🧫🍄

Get yours here ➡️ www.contam.club ⬅️

5 months ago 30 14 1 0
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Look out for an exciting announcement later…. 👀 #ContamCalendar

5 months ago 4 2 0 0
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Identification and response to a putatively hypervirulent, carbapenem-resistant Klebsiella pneumoniae ST395 hospital outbreak in the UK Here, we describe a putatively hypervirulent, carbapenem-resistant Klebsiella pneumoniae (hv-CRKP) outbreak. Nanopore sequencing guided the infection prevention and control (IPC) responses during the ...

Our latest is out tonight in @microbiologysociety.org MGen. Using long read seq to ID and then control hospital transmission of a CRKp we believe shows genomic and clinical signs of hypervirulence

www.microbiologyresearch.org/content/jour...

5 months ago 14 6 1 0

HUGE congrats Dr Hall 👏

5 months ago 2 0 0 0
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Brilliant day having a project meeting with @sheppardlab.bsky.social and @lillycummins.bsky.social today on our BBSRC project. I still love my research even if I get less time on it now.

5 months ago 8 1 0 0

Just submitted my abstracts. Make sure to pop yours in 📝

5 months ago 3 2 0 0
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What makes PhD students happy? Good supervision Supervisors who invest in positive mentoring relationships with their PhD candidates also reap the benefits for their own research.

So much of this article is full of hope then,

"About 43% of respondents had experienced some form of discrimination or harassment.. in around four out of ten bullying cases, a student reported bullying by their supervisor."

We need safeguards in place to stop this from happening.

5 months ago 9 2 0 0