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Posts by James Ferguson

Yea, I suggested as much. Good to see them following through

4 days ago 3 0 0 0
No appropriate license. Also, please stop with the translations spam ยท Issue #1 ยท henriksson-lab/hdf5-pure-rs Hello, You also seem to be trying to change the license. Also, most of the crates you have published in the last few weeks, are not very good. Your translations of tools is pretty much just spam at...

I'm currently a bit unwell. But if anyone wants to talk to this person, they are responding here.

github.com/henriksson-l...

5 days ago 1 0 0 0
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The point is to speed it up... But then it's slower. Lol ๐Ÿ˜น

5 days ago 1 0 1 0
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And they aren't even using a single brain cell to think about licensing.

5 days ago 1 0 1 0

Should we ask them to stop?

5 days ago 0 0 1 0
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After writing my own poa stuff for better consensus calling, this commit was extremely satisfying

"yeet the bio crate"

1 week ago 2 0 0 0

This one hit me right in the sore back

1 week ago 0 0 0 0

pretty sure this lined up with an outage/issues

1 week ago 0 0 0 0
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I doubt 1 person can maintain this many repos, effectively, even with LLM assistance. I have to ask the question: "why tho?". Seems like flag planting rather than doing anything useful.

1 week ago 6 0 1 0
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Yea most likely.

1 week ago 0 0 0 0

Pretty sure it will fail on these shorter, repeat reads too. It's more the consensus part that was not working.

1 week ago 0 0 1 0

Trying to write one complex tool, I have now written 3 other tools: A plotting library, a liftover type tool for repeats/SV, and now a POA library that actually does proper consensus building, even for repeats.
Maybe i'll finally be able to finish this tool ๐Ÿ˜…

1 week ago 6 0 1 0

Basically, never trust an LLM, and don't outsource your thinking to one either.

1 week ago 0 1 0 0

claude: It is definately A
me: it's B
claude: You're absolutely right, it's B
me: I was taking the piss, it's actually C
claude: oh you got me! it's C
me: it's actually D
claude: You're absolutely right! it is D
me: no, it's C. What the hell is wrong with you
claude: oh you rascal, you got me again!

1 week ago 0 0 1 0

Don't forget, Claude is also analysing the results of those tests. Marking tests as `#[ignore] and saying things like "this was a pre-existing warning/error, it's fine"

1 week ago 0 0 1 0

Yea, I do wonder how the testing is being done in these cases. Really complex software is a lot harder to do this with (ask me how I know ๐Ÿ˜…)

1 week ago 2 0 1 0
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system76 system? I spy a CD?!?!

1 week ago 1 0 1 0

Need flamegraph to stop using perf especially on Ubuntu 22.04 with bugged perf that takes 10 years to do the simplest thing

2 weeks ago 1 0 0 0

Nice one mate!

2 weeks ago 2 0 1 0

Honestly I think LLMs for code are probably the least egregious use given the skills are mostly built from open source and freely available information. It's everything else they were trained on that I have an issue with, and how they are used in those areas.

2 weeks ago 0 1 0 0
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me: I should add some interactivity to my plots

also me: *Shoves fully playable DOOM into an SVG file*

cargo build --features cli,doom
kuva doom -o doom.svg

open in browser. that's it.

Yes, it's April 1st, but this is real ๐Ÿ˜…
psy-fer.github.io/kuva/doom.html

2 weeks ago 1 0 1 1

big kuva update incoming ๐Ÿ˜Ž

2 weeks ago 0 0 0 0

Rip and Tear my friend.

I'll release it with v0.1.5 (next release, which is almost done), and embed the SVG in the docs so people can play it.

But if people wanna make their own, they can just clone the repo, switch to dev, compile with --features cli,doom and do kuva doom -o doom.svg

2 weeks ago 0 0 0 0
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I got a little carried away making interactive plots using native SVG features. Then @jpelbers.bsky.social asked if it could run DOOM. It was probably a joke...but I took it as more of a challenge.

Anyway.
kuva doom -o doom.svg

Fully playable and fully contained DOOM inside an SVG

2 weeks ago 9 4 0 1
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I may have gotten carried away...๐Ÿ˜…

2 weeks ago 0 0 1 0

New update should be done soonish. Lots of fixes and new stuff

2 weeks ago 0 0 1 0
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Cooking up a cool feature for kuva with --interactive, where it adds a search, and group highlighting and coordinates on mouse, all within the native SVG file, when looking at it with a browser. This is just the minimal working prototype. What do you think?

2 weeks ago 5 2 1 0

depends on tool, it's popularity, and how complete the tool is on release. we don't tend to release things that don't have most of the features already implemented. Write good tools first, then maint time is low anyway ๐Ÿ˜…

2 weeks ago 1 0 0 0

our lab has made a lot of tools...

3 weeks ago 0 0 1 0

speaking of which, i need to flag some issues with the rust bio crate and their POA stuff crashing when encountering homopolymers. Wrote my own banded-poa as a fallback for now.

3 weeks ago 1 0 0 0